BAC Information

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BAC

Clone NameMSMg01-151K21
Chromosome12 (Build37)
Map Location 13,172,865 - 13,173,103
singlet/doubletsinglet
Overlap genenone
Upstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449
Downstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151K21.T7 (MSMg01no151_k21.b1)MSMg01-151K21.TJ (MSMg01no151_k21.g1)
ACCAG353775AG353776
length792737
length of high quality
(start - end)
248 (73 - 320)411 (74 - 484)
definitionCHROMAT_FILE: MSMg01no151_k21.b1 PHD_FILE: MSMg01no151_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:33 2005CHROMAT_FILE: MSMg01no151_k21.g1 PHD_FILE: MSMg01no151_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAGCAGCAGTTGACCATGCAAGGTGAGTCAGGTGAAAAAGCCCAGGTTG
TGCTGTGCCTGGCTTCCTATCTAAAGATACATATACCACCACCTCCTCCG
CCCTCCACACACATGAGGAAAAGTAGGGGTGGGAGTGGGGCAATCGTAAG
GGAAGGCAGTTGAGCATACCCACCCAGAGGCAGAGTAGAGCACGCATGAT
CACAAGTTCACTCTCGTGCTTACACCCAGCTCTGTCTCTCCATTTTTATA
CAGATTCCACACTTGATCCCACATGTTTCTTTTTCATGTCTTAATGCAAA
AGGCACTTACTTTATCTCTCAGTACCCCACACACCCCCTGCCCTCCATAG
CTCCTAACAGTCCCCCCACCCCAGAATCCAACGTGTCCTCTGAGGCTCAT
GACCCACTCTTACCTCTGATACCCTATGACCCGACCACACACCCGTTGCC
TACTTCCCACCTTGAATGGCCCCCAACCCCCCCTCTCCCCTCCGTGCGAC
AGGACCCCGTACCGTATCCCCCGAAAGATCTTTTCTAGACCCCCTTCCAC
TTTTCAGTCCCCCCCCCCCATCCCCACCCCTCCGCGCCTTTATGTCCCAC
CCTTACCTGTCCATCGTGCCTGTACCCATTCCCCCCTATCCCTCGCCCTT
CCCACCCTTTCCCCCCCTTTTTTCCCCCCCGTTTCCCCCCCCTATTACTC
GCCCTTCTTTCCCCCCCCCCCCTTTTCCCCTTTCCCCCCTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGGGATTGGAGTTACTGTAGGGTTT
GAGCTGCCATGTGGGTGCTGGGAATTGAACCCTAGTCCTTTGCAAAAGCT
TTTAACAACCGAGCCATCTCTCCAACCATATATATAATCTTCAGATGGAT
GATACTTAGGCCCAAAACACTCAACAGATTTTTTTTCTTTTCTTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCCCCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTGGACTTAGAACT
CCAGTGCTCAGAGGCTCATCGGGCAAATTAGGCCAATACACTACTTTATC
TTATTCAGGGTGTATGTTCCCTTTTCCTGCCGATCCCATGAAAATTGGAA
AGATGGGACCATTCACACCACCTGCGCGCGTATCCCCCTCCTCTATCCTC
CCCCCAATAACCCATTTCCTCCTGACCACCCCGACCCACGCCCCCCCGTC
CCCTCCCCTCACCCCCCCCACCAATATATCACCGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_k21.b1 MSMg01no151_k21.b1 CHROMAT_FILE:
MSMg01no151_k21.b1 PHD_FILE: MSMg01no151_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:33 2005
         (248 letters)



>mm_chr12_13172532_13173180
          Length = 649

 Score =  385 bits (199), Expect = e-111
 Identities = 232/249 (93%), Gaps = 11/249 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgagtcaggtgaaaaagcccaggttgtgctgtgcctggcttcctatctaaagatacat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggtgaatcaggtgaaaaagcccaggttgtgctgtgcctggcttcctatctaaagatacat 513

                                                                       
Query: 61  ataccaccacctcctccgccctccacacacatgaggaaaagtaggggtgggagtggggca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 512 ataccaccacctcctctgccctccacacacatgaggaaaagtaggggtgggagtggggcg 453

                                                                       
Query: 121 atcgtaagggaaggcagttgagcata-cccacccagaggcagagtagagcacgcatgatc 179
           ||||          |||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct: 452 atcg----------cagttgagcatatcccacccagaggcagagtagagcatgcatgctc 403

                                                                       
Query: 180 acaagttcactctcgtgcttacacccagctctgtctctccatttttatacagattccaca 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acaagttaactctcgtgcttacacccagctctgtctctccatttttatacagattccaca 343

                    
Query: 240 cttgatccc 248
           |||||||||
Sbjct: 342 cttgatccc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)