BAC Information

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BAC

Clone NameMSMg01-152B23
Chromosome12 (Build37)
Map Location 64,125,843 - 64,211,872
singlet/doubletdoublet
Overlap geneEG382606
Upstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
Downstream geneLOC435302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152B23.T7 (MSMg01no152_b23.b1)MSMg01-152B23.TJ (MSMg01no152_b23.g1)
ACCAG354095AG354096
length746743
length of high quality
(start - end)
549 (33 - 581)453 (83 - 535)
definitionCHROMAT_FILE: MSMg01no152_b23.b1 PHD_FILE: MSMg01no152_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:08 2005CHROMAT_FILE: MSMg01no152_b23.g1 PHD_FILE: MSMg01no152_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(64,125,843 - 64,126,377)(64,211,619 - 64,211,872)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGAAT
TCTAATCATCAATGCCCAGAACAAGAACCTAGCAGAGATTACATTGTCAC
AGGAATGCCATCATCATATTAGCAGAATAAAGAGAATAGCTAACTCATAG
ATTGCATAAAACTGTTTTTTAAATAATACTTCTAGATTTTAAAGTCAGTT
ATGGACAAAATGCATTAGAATAATTAATTATCACAATTATGGGTGTGCTT
TTCAAGCAACAGTTTGTGTGCAAACACGTTCTTAGTTTCTTATGTGCCTA
AGTGTCTACTTTGGACTATGAATGATGCAGTGCAGCAAGCTATGGAATGA
TGGCAGTATGTGCTTCGATCTTTTCTTAATTTCCTTCTCCAGTTAATGTT
CTTATTTCCTTTCTAGATTCCATCTTGATCTTTAATTATGCTCTATAATT
GTCTCTGCGTGAAAACATCTGCTATTGCCTACCCATTCGTTCCTGTGTTA
TGTCAGATTCCCTGTGGACTATACTATAACTAGTTGATATTGAACTTTCT
AGTTGCCTTTTGATCATTTTCCACCCTGAGGGCATGGCTAGGACCAGAAA
ATTTACCACTATCACCTTAATACTACCCAACAGATATTTCTTACCCCTAC
CTATATCACGATATTCATAACATTACTTCACGCGCCCCAGAGCCACTATT
TTATGTCCCCTGTTTGTTGTTGCTTACCCCTTTTTGACACGCTTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAAATTAGACACTGAATTAGTTTCCACT
TATTTTGAAGACAAGAAAGCATATCTGAATGATTTAAATTCTACTCAACT
TAAAAATTTCCATACAAATAACTATTCATGTATCATTAAATTATTAATGA
CAAGAATATTCATATATCAAATTAATACCTTCCATCCAGGGCGATCTTGG
ATTATTGCTGATTAATAAATAACAAAATAGATATTTCTTAATTGTAACTC
CCTTGAGGGATATCCACTGGAACCACAATATCTCATGTCTAATTGAACTA
TATAAGAGACTCTTTTGTTTTAACAGTGCTGAGATATCTTTGTAAAATAA
ATCAGTGGCTTTCACGAAAGACATATTATTTTAATTCTATGTATGCCATA
AGAAGAAATAGGCTTTGCATTTTTCTCTTTAATTACTTTTTGTTGAGTTC
TGCTTGAACTTAAGAACATAGAGTTATAAACATGTCCATGCTTTTAATTT
TTTCAAGCAGTTACTAGTAAGTGACTTGAAATCAGAGGTTGGTTTAATTT
TCTAGATTTAACAACCTTAAGACAATGCATTAAAACTATCTTATTTAGAA
AGTATTTTCACTGAGAATCTGACAACTTTATATGAGATCATGACATTTAA
AAGTACATTTCTCATCATCCACGTATTACAGGTATATATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_b23.b1 MSMg01no152_b23.b1 CHROMAT_FILE:
MSMg01no152_b23.b1 PHD_FILE: MSMg01no152_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:08 2005
         (549 letters)



>mm_chr12_64125629_64126577
          Length = 949

 Score =  988 bits (511), Expect = 0.0
 Identities = 529/535 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattctaatcatcaatgcccagaacaagaacctagcagagattacattgtcacaggaat 74
           |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattcaaatcatcaatgaacagaacaagaacctagcagagattacattgtcacaggaat 274

                                                                       
Query: 75  gccatcatcatattagcagaataaagagaatagctaactcatagattgcataaaactgtt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gccatcatcatattagcagaataaagagaatagctaactcatagattgcataaaactgtt 334

                                                                       
Query: 135 ttttaaataatacttctagattttaaagtcagttatggacaaaatgcattagaataatta 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttttaaataatacttctagattttaaagtcagttatggacaaaatgcattagaataatta 394

                                                                       
Query: 195 attatcacaattatgggtgtgcttttcaagcaacagtttgtgtgcaaacacgttcttagt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 attatcacaattatgggtgtgcttttcaagcaacagtttgtgtgcaaacacgttcttagt 454

                                                                       
Query: 255 ttcttatgtgcctaagtgtctactttggactatgaatgatgcagtgcagcaagctatgga 314
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 ttcttatgtgcctaagtgtctactttggactatgaatgaagcagtgcagcaagctatgga 514

                                                                       
Query: 315 atgatggcagtatgtgcttcgatcttttcttaatttccttctccagttaatgttcttatt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgatggcagtatgtgcttcgatcttttcttaatttccttctccagttaatgttcttatt 574

                                                                       
Query: 375 tcctttctagattccatcttgatctttaattatgctctataattgtctctgcgtgaaaac 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 575 tcctttctagattccatcttgatctttaattatgctctataattgtctctgtgggaaaac 634

                                                                       
Query: 435 atctgctattgcctacccattcgttcctgtgttatgtcagattccctgtggactatacta 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atctgctattgcctacccattcgttcctgtgttatgtcagattccctgtggactatacta 694

                                                                  
Query: 495 taactagttgatattgaactttctagttgccttttgatcattttccaccctgagg 549
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taactagttgatattgaactttctagttgccttttgatcattttccaccctgagg 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_b23.g1 MSMg01no152_b23.g1 CHROMAT_FILE:
MSMg01no152_b23.g1 PHD_FILE: MSMg01no152_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:08 2005
         (453 letters)



>mm_chr12_64211419_64212271
          Length = 853

 Score =  375 bits (194), Expect = e-108
 Identities = 239/254 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaattagtttccacttattttgaagacaagaaagcatatctgaatgatttaaattct 60
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 454 actgaattagtttccagttattttgaaggcaagaaagcatatctgaatgatttaaattca 395

                                                                       
Query: 61  actcaacttaaaaatttccatacaaataactattcatgtatcattaaattattaatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 actcaacttaaaaatttccatacaaataactattcatgtatcattaaattattaatgaca 335

                                                                       
Query: 121 agaatattcatatatcaaattaataccttccatccagggcgatcttggattattgctgat 180
           ||||||||||||||||||||||||| ||||||||||||  |||||||| |||||| ||||
Sbjct: 334 agaatattcatatatcaaattaatatcttccatccaggatgatcttggcttattgttgat 275

                                                                       
Query: 181 taataaataacaaaatagatatttcttaattgtaactcccttgagggatatccactggaa 240
           |||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||| ||
Sbjct: 274 taataaataaaaaaatagatatttcttaagtgtaactcccttgtgggatatcaactgtaa 215

                         
Query: 241 ccacaatatctcat 254
            || ||||||||||
Sbjct: 214 gcataatatctcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)