BAC Information

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BAC

Clone NameMSMg01-152O01
Chromosome12 (Build37)
Map Location 102,404,105 - 102,404,549
singlet/doubletsinglet
Overlap genenone
Upstream geneCalm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
Downstream geneMylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152O01.T7 (MSMg01no152_o01.b1)MSMg01-152O01.TJ (MSMg01no152_o01.g1)
ACCAG354630AG354631
length708707
length of high quality
(start - end)
407 (180 - 586)441 (79 - 519)
definitionCHROMAT_FILE: MSMg01no152_o01.b1 PHD_FILE: MSMg01no152_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:06 2005CHROMAT_FILE: MSMg01no152_o01.g1 PHD_FILE: MSMg01no152_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGATGAAAAACAAAGGGCTGAGAAGCACCTGAAAAAAAAT
GTTCAACATCCTTAGTGATCAGGGAAATGCAAATCAAAACAACCCTGGGA
TTCCACCTCACACAAGTCAGAATGGCTCAGATCAAAAATTCAGGTGACAT
CAGATGCTGGTGAGGATGTGGAGAAAGAGAAACACTCCTTCATTGCTTGT
GCGATTGCAAGCTGGTACAACCACTCTGGAAACCAGTCTGGCAGTTCAAC
AGAAAATTGGACATAGTACTACAAGAAGACACACCAATACCTCTCCTGGG
CATATATCCAGAAGATGTCCAACTGGTAATAAGAAAACATGCTCCAGTAT
GTTCATAGCAACCTTATTTATAATAGTCAGAAGCTAGAAAGTACCCAGAT
GTCCCTCAAAAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAGGCAA
ACGGATGTATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAA
AGAACTCCCTTGATATGCACTCACTGATAAGTGAATATTAGCCCAGAAAC
CTAGAATACCCAAGATACAATTTTCAAAACCCCAGAAAATCCAGAAGGAA
GAGCAATG
CGTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTCAACAGAGTACTTGTTC
GACAAGCAAAAGGACCCGAGTTCAAGTCTCCAGCACCATTAAAATAGGTT
ACTGGGGAGGCAGCCATAGGATCCTGGGTCCTATTAGTCACCCAGTATTC
TCATCCTGTGGGCTCCAGGTTCAGTGAGAGGCTCTGTCTGGAAAATGCTT
ACCACCTTCTAGTGCAAGAGACAACATACAACAGAAAGGAGCCTCCAGTA
TCTGGGACTGTGTTATTACTAGTAGAGACACTTTGTTTCAGGGCGAGGAC
TAACTTCTTTTATTCAAGTTCACCAGGGGAGAAAAAAAGATTAATTCTTA
CACAGGATCTTTCCAGGAACACAGAGCAGTTTACTTCTGTGATATTTATA
TGAACAGGCTTGATGTGGTCACGTGACAGTTCTTTTGAAGTAAAGCATCA
TTATAAAATGGGATTAACACCAATGGCTTGTGCTGTAAGATCAAGAATTG
ACAAATGGGACCTCATAAAATTGGAAAGCTTCTGTAAGGCAAAGGATACT
GGCAATAAGACAAAAAGGTGACCAACAAATTGGGAAAAGATCTTTATCAA
TCCTAAATCTGATAGGGGGGCTAATATCCAATATCTATAAAGAACTCAAG
AAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_o01.g1 MSMg01no152_o01.g1 CHROMAT_FILE:
MSMg01no152_o01.g1 PHD_FILE: MSMg01no152_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:06 2005
         (441 letters)



>mm_chr12_102403909_102404749
          Length = 841

 Score =  729 bits (377), Expect = 0.0
 Identities = 427/445 (95%), Gaps = 4/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcaacagagtacttgttcgacaagcaaaaggacccgagttcaagtctccagcacca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 tcattcaacagagtacttgttcgacaagcaaaaggacctgagttcaagtctccagcacca 256

                                                                       
Query: 61  ttaaaataggttactggggaggcagccatag---ga-tcctgggtcctattagtcaccca 116
           ||| |||||||||||||||||||||||||||   || |||||||||||||||||||||||
Sbjct: 257 ttataataggttactggggaggcagccataggcagattcctgggtcctattagtcaccca 316

                                                                       
Query: 117 gtattctcatcctgtgggctccaggttcagtgagaggctctgtctggaaaatgcttacca 176
           |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 317 gtatcctcattctgtgggctccaggatcagtgagaggctctgtctggaaaatgcttacca 376

                                                                       
Query: 177 ccttctagtgcaagagacaacatacaacagaaaggagcctccagtatctgggactgtgtt 236
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccttctagtgcaagagacaacatgcaacagaaaggagcctccagtatctgggactgtgtt 436

                                                                       
Query: 237 attactagtagagacactttgtttcagggcgaggactaacttcttttattcaagttcacc 296
           |||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 437 attattagtagagatactttgtttcagggtgaggactaacttctttcattcaagttcacc 496

                                                                       
Query: 297 aggggagaaaaaaagattaattcttacacaggatctttccaggaacacagagcagtttac 356
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 aggggagaagaaaagattaattcttacacaggatctttccaggaacacagagcagtctac 556

                                                                       
Query: 357 ttctgtgatatttatatgaacaggcttgatgtggtcacgtgacagttcttttgaagtaaa 416
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 557 ttctgtgatatttatatgaacaggtttgatgtggtcacgttacagttcttttgaagtaaa 616

                                    
Query: 417 gcatcattataaaatgggattaaca 441
           |||||||||||||||||||||||||
Sbjct: 617 gcatcattataaaatgggattaaca 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)