BAC Information

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BAC

Clone NameMSMg01-152O10
Chromosome12 (Build37)
Map Location 26,288,856 - 26,288,979
singlet/doubletsinglet
Overlap geneLOC100042973
Upstream geneGrhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
Downstream geneLOC100042974, LOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152O10.T7 (MSMg01no152_o10.b1)MSMg01-152O10.TJ (MSMg01no152_o10.g1)
ACCAG354648AG354649
length710716
length of high quality
(start - end)
84 (51 - 134)124 (78 - 201)
definitionCHROMAT_FILE: MSMg01no152_o10.b1 PHD_FILE: MSMg01no152_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:08 2005CHROMAT_FILE: MSMg01no152_o10.g1 PHD_FILE: MSMg01no152_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTACTATAACAAGAGGATCCGCGGAATTCACGATCTTCCACCTCCCGGA
TTCCACAGACATACTGTATCAAAGCTGAGTCTAACAGTATGTTCTATCTA
GCCAAATGTTTTTCATCTGAGGGGACAAGATGAAGAAACCCTCTGGATTG
ATAACGTTCCTATAACTTCAAATTAGCTATCTGACAAAACAAGGTGGATT
GCACCCTAGGAAGGACCCCTGAGATTGACCGCTGATCTCCACAGAAACTT
CTTTCCACACATGTACATATGAACCCACTTTCACATGCACCTGCTCATCT
CATGTCCACACATCCACACACACACAAAGTCCTATTTTTCTAGGTTCATT
TAAGCTCCTCACTGGATATCAGTTCCTTTCTTCTACAAAAATGTTGCAGT
AATGTTCACATAACTTCAAATTGCTCTTCATGGATTCAGATAAGTCTTAG
TCGCCCATAGCCCATCCTATCACACCTTCAGTCTAGCAGCCTATTTTACC
CTAGCCCATATCTATCTATTCAATTCTTTTCCCAGAGTACCGTCCAGTGG
CATCCACCACATCCCACGTTATGCACCAAATCCCGCCCCACCCCTAACCT
GCTTCTCCCCACCCAAGACGGCAACTTCTTACCCCTCCACTATGCCCTTC
CTAACCTCTCTTGACCCTCTCTTTGGCCCCCCTCCCCTGCTTCTTGCCCC
CCCCAGCCTC
CGATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAACTCCGACCACAGTCCTGGGGGGAGGTGGTG
AGCTGAGCAAGAGGCATCCATGAAGGGGGGGGTACCTGCACTGCCCAGCA
GGAACACAGCCTTGAAGGAAAACCTGACCTTCTGAAGGAAAGGGAGAGGC
AGAGAATAGAGCAAAAGTGAGACAGCATAGCCCAGATGGAGGAGCACAGG
GCTGATACCCTAACAGGACTTTAGGGTCCCTTTCACCATTTTATAACCTG
AGAAGAAGCCGTTTGGCACTTTTGCATATTTGGTTCTTAATGTATGCAGT
AAAGCAGTGCTGACTTCTCTTAGGAGCTTCTGGGGGTAACACTGGATGAG
GTCCCAAGTGCTAGTCCTTACTGAAGTATGTATTAGATGCTCATTTTGAA
CCTACTGAAATCCGCCCGAGCTGGAAAGAGATAAAGGAGAGGCTGGGACC
CAGTCCATGAGGAAGGGGACATCTCTTTTAGAAAAATCCTCTCCTTTCTG
CTGTCCCCACCTCCGCAGGACCATGGTTCCCGAAGACTCTCCAGCTCCAT
GTAGTTCTCTATTCCAGACTCCATCCTTGGGGTTTCCAGAACCTTCTGAA
GGCTTCAGACGCTCCACCTCACTGGCTCCAAGACTGCCTACCTACACACA
GCTGCCCAGGGGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_o10.g1 MSMg01no152_o10.g1 CHROMAT_FILE:
MSMg01no152_o10.g1 PHD_FILE: MSMg01no152_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:08 2005
         (124 letters)



>mm_chr12_26288656_26289179
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtcctggggggaggtggtgagctgagcaagaggcatccatgaaggggggggtacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 cacagtcctggggggaggtggtgagctgagcaagaggcatccatgaagggggggggacct 265

                                                                       
Query: 61  gcactgcccagcaggaacacagccttgaaggaaaacctgaccttctgaaggaaagggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcactgcccagcaggaacacagccttgaaggaaaacctgaccttctgaaggaaagggaga 205

               
Query: 121 ggca 124
           ||||
Sbjct: 204 ggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)