Query= MSMg01no153_j13.b1 MSMg01no153_j13.b1 CHROMAT_FILE:
MSMg01no153_j13.b1 PHD_FILE: MSMg01no153_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:00 2005
(353 letters)
>mm_chr12_13387545_13388297
Length = 753
Score = 609 bits (315), Expect = e-179
Identities = 339/353 (96%), Gaps = 10/353 (2%)
Strand = Plus / Minus
Query: 1 aagctgagtactatcactatcttattaggattggaatttcattccttctgctttcagact 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 736 aagctgagtactatcactatcttattaggattggaatttcatttcttctgctttcagact 677
Query: 61 caattgtatctctaataattcatcatttaatcctgctgccagaaagtgtgttccctgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caattgtatctctaataattcatcatttaatcctgctgccagaaagtgtgttccctgttc 617
Query: 121 caccaggacttaagattccactcagtcttctttaccctgtatcccttcccagcaggacag 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 616 caccaggacttaagattccactcagtcttctttatcctgtatcccttcccagcaggacag 557
Query: 181 attctgaaggtaacttcctcatacacacagagggagcacatccaagctctgactctatcc 240
| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatct----------tcctcatacacacagagggagcacatccaagctctgactctatcc 507
Query: 241 cagaatcatcttgttccgaatatttacctttacgtgagcctcttctattacactctccac 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagaatcaccttgttccgaatatttacctttacgtgagcctcttctattacactctccac 447
Query: 301 ctactgcctcactcagtgcaaagtcacaggttcttcccactgaggctttgctg 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctactgcctcactcagtgcaaagtcacaggttcttcccactgaggctttgctg 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_j13.g1 MSMg01no153_j13.g1 CHROMAT_FILE:
MSMg01no153_j13.g1 PHD_FILE: MSMg01no153_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:00 2005
(588 letters)
>mm_chr12_13220544_13221531
Length = 988
Score = 1079 bits (558), Expect = 0.0
Identities = 584/600 (97%), Gaps = 13/600 (2%)
Strand = Plus / Plus
Query: 1 tgtcacagatttaaatggccccagcagaggatgttcttgagttggtgactcagttctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgtcacagatttaaatggccccagcagaggatgttcttgagttggtgactcagttctgct 249
Query: 61 tccatcacctaagaagctattcagtcatagtagaaggtatatagctggagagaagccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tccatcacctaagaagctattcagtcatagtagaaggtatatagctggagagaagccatt 309
Query: 121 cactgagagcagaaggtatatagctggagagaagctattcagtgatagcagaaggtatat 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cactgatagcagaaggtatatagctggagagaagctattcagtgatagcagaaggtatat 369
Query: 181 agctggagagatggctcccacttaagagcatttgttgatcttgcaaaggacctgggtttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agctggagagatggctcccacttaagagcatttgttgatcttgcaaaggacctgggtttg 429
Query: 241 gttccagcacctatgttggctcaagtca------------gttccaggagatacaataac 288
|||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 430 gttccagcacctatgttggctcaagtcatgtataacgccagttccaggagatacaatatc 489
Query: 289 atcttaagagctctacaggtaccaggcacataaaatatgcaaacacatcaaagaaagttt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atcttaagagctctacaggtaccaggcacataaaatatgcaaacacatcaaagaaagttt 549
Query: 349 aaaaaaaaaagataggaaggaagaaaggaagaaaaatagaagttacttgctgagaaggga 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaaaaaaaa-gataggaaggaagaaaggaagaaaaatagaagttacttgctgagaaggga 608
Query: 409 gattctgaaagaccatccacgttttgagtgttcacataagtccccatgagctgccatatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gattctgaaagaccatccacgttttgagtgttcacataagtccccatgagctgccatatg 668
Query: 469 aagtgactaggctcattgtccaagctgtgcaagcccacacatcctgcccttgtcctcacc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aagtgactaggctcattgtccaagctgtgcaagcccacacatcctgcccttgtcctcacc 728
Query: 529 catacccacccacaggtaggcaagtccaccagggccattccacaaatttctagcatgctc 588
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catacccacccacaggcaggcaagtccaccagggccattccacaaatttctagcatgctc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
