Query= MSMg01no153_m20.b1 MSMg01no153_m20.b1 CHROMAT_FILE:
MSMg01no153_m20.b1 PHD_FILE: MSMg01no153_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:15 2005
(673 letters)
>mm_chr12_95438161_95439234
Length = 1074
Score = 953 bits (493), Expect = 0.0
Identities = 629/682 (92%), Gaps = 23/682 (3%)
Strand = Plus / Minus
Query: 4 ggaattcctacaattttt-tctctctagtttgcatgctcccactaacattacaaacaata 62
|||||||| ||||||||| | ||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 874 ggaattcccacaatttttgt-tctctagtttgcatgttcccactagcatcacaaacaata 816
Query: 63 tgcctatctgcaaaatcaaatcttaagc------ccatagggtccattagacagacctgg 116
|||||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct: 815 tgcctatctgcaaaattaaatcttaagccctagaccataggatccattagacagacctgt 756
Query: 117 aggtgggattaagagtttgcaaatggtgttctagctacagagatattaagcc-attacct 175
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 755 aggtggaattaagagtttgcaaatggtgttctagctacagagatattaagccaattacct 696
Query: 176 agacaccagattttctccctgcttacttagcacagtagagctagtgagatgtcactgatt 235
||| ||||||||||||||| | | || |||||| ||||| || ||||| |||||||
Sbjct: 695 agagaccagattttctccccg---a-gtaacacagt--agctaatgggatgttactgatt 642
Query: 236 atttgtaactaagagtggtccaacgatgaactgaaccaaatggtatcatacgtagtggca 295
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct: 641 atttgtaactaagagtggtccaaagatgaactgaaccaaatggtatcatatgtaatggca 582
Query: 296 cattctgtagctttatcttgactacatacaaggtagtcaacagcagagttcagattctat 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cattctgtagctttaacttgactacatacaaggtagtcaacagcagagttcagattctat 522
Query: 356 aagaacatcgtatgctgatgaacgagtggtcatcaatacagaaaaccaaacacagctgaa 415
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 521 aagaacatcgtatgctgatgaactagtggtcataaatacagagaaccaaacacagctgaa 462
Query: 416 gttacttcaggatcaaaatctctaagaatgctggctggcattttgagaaactcaaagctc 475
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 461 gttacttcaggatcaaaatctctaagaatactgactggcattttgagaaactcaaagctc 402
Query: 476 ttcacagtagctgctcagtctatttctgtctcatattctctaccatgttcccatgcagaa 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 ttcacagtagctgctcagtctatttctgtctcatattctctaccatgttcccatgcag-a 343
Query: 536 aat-ctggacaggggatgagctgaggttttaaaaacctttctcacctgcaaatgtatttc 594
||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 342 aatcctggacaggggatgatctgaggttttaaaaacctgtctcacctgcaaatgtatttc 283
Query: 595 taagtattggctganagttctctctgaaaactgagag---tgatgctcgtgtttctctct 651
|||||||||||||| ||||||||||||||| |||||| |||| || ||| |||||||
Sbjct: 282 taagtattggctgaaagttctctctgaaaaatgagagaaatgat-ct--tgtatctctct 226
Query: 652 gatcttgactgtgtccactgtg 673
|||||| |||||||||||||||
Sbjct: 225 gatctttactgtgtccactgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_m20.g1 MSMg01no153_m20.g1 CHROMAT_FILE:
MSMg01no153_m20.g1 PHD_FILE: MSMg01no153_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:16 2005
(643 letters)
>mm_chr2_122635277_122636319
Length = 1043
Score = 1122 bits (580), Expect = 0.0
Identities = 620/648 (95%), Gaps = 28/648 (4%)
Strand = Plus / Minus
Query: 1 ttcagacccaacgccactgtgtttatgtaagttctctgggaaactctggggaaattgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttcagacccaacgccactgtgtttatgtaagttctctgggaaactctggggaaattgttt 586
Query: 61 aaaactctgggtgccatgacagaattaggttaacaagaaatttagtagggaaaaatgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaaactctgggtgccatgacagaattaggttaacaagaaatttagtagggaaaaatgccc 526
Query: 121 tgcaagataaagactgaaggggaagcggggaggactgaacttcagactgtgacgtgggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgcaagataaagactgaaggggaagcggggaggactgaacttcagactgtgacgtgggtg 466
Query: 181 gtatccctgatggaatatagagaaaaggaaaatcttaggttcagccaagtttgtaggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtatccctgatggaatatagagaaaaggaaaatcttaggttcagccaagtttgtaggcct 406
Query: 241 cccagagtcaaaaccacccagcagaggacctagaactggcaggtattagtaacccatagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cccagagtcaaaaccacccagcagaggacctagaactggcaggtattagtaacccatagt 346
Query: 301 gcctgtcacaagctgaaaaagcacaggctgagctcagtgtccctg-agacactcaagggg 359
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 345 gcctgtcacaagctgaaaaagcacaggctgagctcagtgtccctgaag-cactcaagggg 287
Query: 360 aggcacctgggctctagaatcttcatgcagcaggagttctaagcagccctgtgtcagagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aggcacctgggctctagaatcttcatgcagcaggagttctaagcagccctgtgtcagagc 227
Query: 420 tgcgacacagtctttgacacagttct---gtc-------------cagtgactc------ 457
|||||||||||||||||||||||||| ||| |||| |||
Sbjct: 226 tgcgacacagtctttgacacagttctacagtctctagaaagttctcagt--ctctagaaa 169
Query: 458 --agtctctagaaagtagtgccagctgtaagttgaacacaccacggagacaacaagaaag 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gtagtctctagaaagtagtgccagctgtaagttgaacacaccacggagacaacaagaaag 109
Query: 516 ccatcgccccaacaccagcttcttctcccaagtgctacaacttcccattgctgctagtca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ccatcgccccaacaccagcttcttctcccaagtgctacaacttcccattgctgctagtca 49
Query: 576 agagattttctcaaataagtaaatcaacaaccaagttttatttagaaa 623
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 agagattttctcaaataagtaaatcaacaaccaagttttatttagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
