BAC Information

Click to search

BAC

Clone NameMSMg01-154H02
Chromosome12 (Build37)
Map Location 94,379,882 - 94,380,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039425, LOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H02.T7 (MSMg01no154_h02.b1)MSMg01-154H02.TJ (MSMg01no154_h02.g1)
ACCAG355735AG355736
length701702
length of high quality
(start - end)
654 (48 - 701)625 (74 - 698)
definitionCHROMAT_FILE: MSMg01no154_h02.b1 PHD_FILE: MSMg01no154_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:04 2005CHROMAT_FILE: MSMg01no154_h02.g1 PHD_FILE: MSMg01no154_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGTGTTACTTCACTTGAACATCTTGTACTTACTCTTCCCCC
AGCAATAGGCTTTATGATTGGACCCTTGAAACAAATTTCAAACGTTTATC
TCAACTTCTACAATATGAACATGGTTTCTTACACCAGCAACTAAACACTA
TAGGTTAAACCTAGTTCACTGACTTTTCAAGATATGTTCTTATTGACCTA
CATTAGAACATCTTTTGAAAATTGATAATGTTGCTATCAAGTGTTTATTA
TTTCTGTTGTCAAGTGGCAGTTATTTTGCACATTGCTTACGGTTGGAACC
TATCAGGGGTGTTTGTTTTGCCTTGACTGCTTATATCCAAGTGAAAAAGA
AAAAGAGTTTCTCAAATCAATGTAATTTTTAAAGTAAAGAGAACAAGCCA
TAAAGCTGTGGTTTAACTGGGAACACTTTTCATCTTACCAATTAATTTCA
TAGACTATGCTAAAATCATCCTATACCTTTCTGTTGGGCAATCCATGCTG
CCTACATTTAATATTGCTCTTTTGGAGTACCCCCTGGGTTTTCACAACCG
TTGTTGTTCTGTTTTGGTTTTGGTTGGTTGTTTCCATTTTCTGGTCCCGT
TTGACCCCTGAAAGCTCTATATTGGTACACTTGATTTGACACTCCTTGGC
T
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCAT
GAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTC
CTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCC
TGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATC
TCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTT
GATTTTGTTACTCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTG
AGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGG
AAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAG
GCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAAGAAGGT
GGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCT
CTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCTGCCCCA
GAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTAT
TCCACACGGTCACCCGTGCAGCCTGCCCTCCGAGGAGTCCCGGAGCCAAG
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h02.b1 MSMg01no154_h02.b1 CHROMAT_FILE:
MSMg01no154_h02.b1 PHD_FILE: MSMg01no154_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:04 2005
         (654 letters)



>mm_chr12_94379367_94380420
          Length = 1054

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 316 ttgttttgccttgactgcttatatccaagtgaaaaagaaaaagagtttctcaaatcaatg 375
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttgttttgccttgactgtttatatccaagtgaaaaagaaaaagagtttctcaaatcaatg 795

                                                                       
Query: 376 taatttttaaagtaaagagaacaagccataaagctgtggtttaactgggaacacttttca 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 taatttttaaagtaaagagaacaagccataaagctgtggtttaactgggaacacttttca 735

                                                                       
Query: 436 tcttaccaattaatttcatagactatgctaaaatcatcctatacctttctgttgggcaat 495
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctttccaattaatttcatagactatgctaaaatcatcctatacctttctgttgggcaat 675

                                                                       
Query: 496 ccatgctgcctacatttaatattgctcttttggagtaccccctgggttttcacaaccgtt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccatgctgcctacatttaatattgctcttttggagtaccccctgggttttcacaaccgtt 615

                                                                       
Query: 556 gttgttctgttttggttttggttggttgtttccattttctggtcccgtttgacccctgaa 615
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 614 gttgttctgttttggttttggttagttgtttccattttctggtcccgtttgacccctgaa 555

                                                  
Query: 616 agctctatattggtacacttgatttgacactccttggct 654
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agctctatattggtacacttgatttgacactccttggct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)