Query= MSMg01no154_o02.b1 MSMg01no154_o02.b1 CHROMAT_FILE:
MSMg01no154_o02.b1 PHD_FILE: MSMg01no154_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:38 2005
(494 letters)
>mm_chr12_47325853_47326746
Length = 894
Score = 772 bits (399), Expect = 0.0
Identities = 458/491 (93%), Gaps = 27/491 (5%)
Strand = Plus / Plus
Query: 4 ggaattcagccttgcaccctggcctccttgcagcactgcagcttgccctcatctctttgt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagccttgcagcctggcctccttgcagcactgcagcttgccctcatctctttgt 263
Query: 64 gtcataagcatagtatgtcaaggacacatcagactaatttatttttcaacaatatcagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcataagcatagtatgtcaaggacacatcagactaatttatttttcaacaatatcagaa 323
Query: 124 cttattccataaaaataaggaaacaagctacattgattttattggcaacagttttccaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttattccataaaaataaggaaacaagctacattgattttattggcaacagttttccaag 383
Query: 184 cagtcctgatttcctgaggttgcttttcaaggcaagtacaggtttgtctttctcttcgtc 243
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 cagtcctgatttcctgaagttgctgttcaaggcaagtacaggtttgtctttctcttc--- 440
Query: 244 ctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt 303
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 -tttctttctttcttccttcctttctttctttctttctttctttctttctttctttcttt 499
Query: 304 ctttctttctttctttctttctttctctttctttcttctttctctctctttctttctttc 363
|||||||||||||||||||||||||| |||||||| || ||||||||| || |
Sbjct: 500 ctttctttctttctttctttctttct--ttctttct-ctctctctctct--ct------c 548
Query: 364 tttctttctttctttttttcttttccttccttccttccttccttccttccttccttcctt 423
||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 549 tttctttctttctttttttcttt--ctt----------ttccttccttccttccttcctt 596
Query: 424 ctttccttccttcttttctttcttttattcttcctttttatgtcaatatttcaactcaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctttccttccttcttttctttcttttattcttcctttttatgtcaatatttcaactcaca 656
Query: 484 cattacacatc 494
|||||||||||
Sbjct: 657 cattacacatc 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 220
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_o02.g1 MSMg01no154_o02.g1 CHROMAT_FILE:
MSMg01no154_o02.g1 PHD_FILE: MSMg01no154_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:38 2005
(428 letters)
>mm_chr12_47474414_47475241
Length = 828
Score = 768 bits (397), Expect = 0.0
Identities = 421/429 (98%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 1 ttatttaaagtatgcacaacagagaagctttgacatataaaccataaaaccatataacta 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 628 ttatttaaagtatgcacaacagagaagctttgacatataaaccataaaaatatataacta 569
Query: 61 tcccaactgtgttatttgtaacagtggctaagctggaagcattcaatgtgtccatcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcccaactgtgttatttgtaacagtggctaagctggaagcattcaatgtgtccatcagcc 509
Query: 121 agacaacagggaaatacataatactttcatacaatgaaataatcttgatcagagaaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agacaacagggaaatacataatactttcatacaatgaaataatcttgatcagagaaagct 449
Query: 181 actgctatgttttgtagtgacttccctctagccggggtgtatttttctttcaaccactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actgctatgttttgtagtgacttccctctagccggggtgtatttttctttcaaccactca 389
Query: 241 cttcaccatgttgat-ctctaaagcatcagttagtgaagctgacactatccctgctgtgt 299
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttcaccatgttg-tcctctaaagcatcagttagtgaagctgacactatccctgctgtgt 330
Query: 300 attcgttgtgccatttctagtccccaaagcttaggatttctctcatcttcacactgtgca 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atttgttgtgccatttctagtccccaaagcttaggatttctctcatcttcacactgtgca 270
Query: 360 atctgtctgaccacctgattcctcgccagaatcatgttccctgtgtgtactccttacccc 419
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 269 atctgtctgaccacccgattcctcaccagaatcatgttccctgtgcgtactccttacccc 210
Query: 420 tgagactca 428
|||||||||
Sbjct: 209 tgagactca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
