BAC Information

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BAC

Clone NameMSMg01-155C07
Chromosome12 (Build37)
Map Location 46,010,220 - 46,010,826
singlet/doubletsinglet
Overlap geneStxbp6
Upstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155C07.T7 (MSMg01no155_c07.b1)MSMg01-155C07.TJ (MSMg01no155_c07.g1)
ACCAG356241AG356242
length740745
length of high quality
(start - end)
613 (44 - 656)374 (72 - 445)
definitionCHROMAT_FILE: MSMg01no155_c07.b1 PHD_FILE: MSMg01no155_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:59 2005CHROMAT_FILE: MSMg01no155_c07.g1 PHD_FILE: MSMg01no155_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCCTAGATAGCATATAACATCAATAAATGGTTCCTCTCAGGTCTA
TAGTACTGCACATACTGAGGCTCATTCCTTATGTTTTGGGGTTATCCAGG
ACTAATGCTTCCTGATCACTTTCTTCCATTCTTGAGAGAGACATGTTCCT
ATGTTTCCATCAAAGAAAGACCAAAGTCTGTAGAAGATCAATCCCAGATA
ATTTTGCTATTAGTTCTGATGAAAAAGAATGGCTTCATGTTTTTCTTTAT
TCTTAATATAGAGTTGATACTAGATCCTCAAGAGTAGCTTAACTACAGCT
AAGAAGCAATGATATCAAATGTTGTGGCCTGATTATCATTACCATTGTTA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACGTTGTATTTTATCTTTATTTCATGAACTCCAAAATGTGTTTTA
GTAGTTGATCTCTCCATGAAACATTCTATAAAAATAAAACCAGACTGGAA
TTATGGGATGGAGATCCCCAGCTTTTAGTAAGCCCAACTAGAAAGCATCC
TACTTAATTAAAAACCAACGGGCAACTCCTTCCATAGGTATTTTGTTCCC
TATTCTAAGGAGGAATGAAGTATCCACACGTTGGTCTTCCCTCTTCTTGA
TTTTCTTGTGCCTTACAATTGTATCTTGGGTACTCTACCN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGGTCCCAAGGAACTAGGCCAGAAAAG
TCACCATAGGGAAGGAAATAGAGGAGGCTGGGGAGAGAAAAAACATGAGT
GCAAACATAGGGAGAGAGAAACAGGCAGAGAGGGGAATAGAGAAGAGAGA
CCAAAATGTTTGGATAATACAAGGAAGAATGCCTTGGTTAGGGGAAGCCC
AGCCCCTGGGCTGGAAAGTGTAGCATAGAGGGCAGGTATACCATCCATGC
CTTGTAACATGTAGGGACTGAGGCATGCTGGGGGAACCTGGAGACCAGGT
TTGCTTTGGTATGTAAAATAATGCACTTCAGCCCTTTGATCCAGGCCTAA
ATCTCAGTTTATTTGCCCTGATGTTCTTGGTCCCTCCTATCCACCTGGAG
GTAATGGTCCCTTATCTCAGCTTCTATCTGTTATTACCCTGCATCCTAGA
CTCTGCTTGTTTGTCCACATTCTGTCCTAATCTACCTCTCTGACCCTGCA
CGTTTCACCTGCCCTGTCCACCGTTTACCTCGTTGACCACACCCCGCTTT
CCCTTCTCTTTGCCTTTTTGCCTTGGTCCGTTATTCCCGGACCATCTGGA
CTTTTTACCTTTATCCCTTACCCCCTTGTTTCTCTTTCCCGTTTTTCCTT
ATACCGCCCTTTATCGTTGTCTTCCCCCATTCCCCACCTGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_c07.b1 MSMg01no155_c07.b1 CHROMAT_FILE:
MSMg01no155_c07.b1 PHD_FILE: MSMg01no155_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:59 2005
         (613 letters)



>mm_chr12_46010016_46011028
          Length = 1013

 Score = 1123 bits (581), Expect = 0.0
 Identities = 602/609 (98%), Gaps = 2/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcctagatagcatataacatcaataaatggttcctctcaggtctatagtact 64
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcattcctagatagaatataacatcaataaatggttcctctcgggtctatagtact 264

                                                                       
Query: 65  gcacatactgaggctcattccttatgttttggggttatccaggactaatgcttcctgatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcacatactgaggctcattccttatgttttggggttatccaggactaatgcttcctgatc 324

                                                                       
Query: 125 actttcttccattcttgagagagacatgttcctatgtttccatcaaagaaagaccaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actttcttccattcttgagagagacatgttcctatgtttccatcaaagaaagaccaaagt 384

                                                                       
Query: 185 ctgtagaagatcaatcccagataattttgctattagttctgatgaaaaagaatggcttca 244
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ctgtagaagatcaatcccagataattttgctattagctctgatgaaaaagaatggcttca 444

                                                                       
Query: 245 tgtttttctttattcttaatatagagttgatactagatcctcaagagtagcttaactaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtttttctttattcttaatatagagttgatactagatcctcaagagtagcttaactaca 504

                                                                       
Query: 305 gctaagaagcaatgatatcaaatgttgtggcctgattatcattaccattgttacacacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 505 gctaagaagcaatgatatcaaatgttgtggcctgattatcattaccattgttacaca-a- 562

                                                                       
Query: 365 acacacacacacacacacacacacacacacacacacacacacacacacacgttgtatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acacacacacacacacacacacacacacacacacacacacacacacacacgttgtatttt 622

                                                                       
Query: 425 atctttatttcatgaactccaaaatgtgttttagtagttgatctctccatgaaacattct 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atctttatctcatgaactccaaaatgtgttttagtagttgatctctccatgaaacattct 682

                                                                       
Query: 485 ataaaaataaaaccagactggaattatgggatggagatccccagcttttagtaagcccaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ataaaaataaaaccagactggaattatgggatggagatccccagcttttagtaagcccaa 742

                                                                       
Query: 545 ctagaaagcatcctacttaattaaaaaccaacgggcaactccttccataggtattttgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 743 ctagaaagcatcctacttaattaaaaaccaacgggcaactccttccataggtagtttgtt 802

                    
Query: 605 ccctattct 613
           |||||||||
Sbjct: 803 ccctattct 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)