Query= MSMg01no156_d01.b1 MSMg01no156_d01.b1 CHROMAT_FILE:
MSMg01no156_d01.b1 PHD_FILE: MSMg01no156_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:15 2005
(668 letters)
>mm_chr12_80490903_80491975
Length = 1073
Score = 1222 bits (632), Expect = 0.0
Identities = 661/680 (97%), Gaps = 16/680 (2%)
Strand = Plus / Plus
Query: 5 gaattccttcactgtggcatctcagcatgctttggtttataataagttcttgtctgtgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcactgtggcatctcagcatgctttggtttataataagttcttgtctgtgat 264
Query: 65 aaggagttgacagcttcaaaagcccaccctcttgaacaagctgttgcctggcagccacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggagttgacagcttcaaaagcccaccctcttgaacaagctgttgcctggcagccacag 324
Query: 125 aggaggctgtttttttt-----gatttagagtatggctgtgctaagggttgaacatttgt 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaggctgtttttttttttttgatttagagtatggctgtgctaagggttgaacatttgt 384
Query: 180 ttttttgtttgtttgtttgtttttaagagaaggaaagaaagtgaatcagacttttttttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttttgtttgtttgtttgtttttaagagaaggaaagaaagtgaatcagacttttttttt 444
Query: 240 ttttt-----------aaacctaggctgattccctgacttagcagctaagaatagggtgg 288
||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 ttttttttttttttttaaacctaggctgattccctgacttagcagttaagaatagggtgg 504
Query: 289 caggaaacatggctgtgcacatgtctgttgaatgctgcctttgatcctctagctatgttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggaaacatggctgtgcacatgtctgttgaatgctgcctttgatcctctagctatgttc 564
Query: 349 ccaggaccactatgcatatggtggttctatttttggtaattttgaggaacctccgttcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaggaccactatgcatatggtggttctatttttggtaattttgaggaacctccgttcta 624
Query: 409 atttctgtagttgctacactaatttacaatccccaaatagtatacaggattacccttctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttctgtagttgctacactaatttacaatccccaaatagtatacaggattacccttctt 684
Query: 469 tgcatcattgataacatttgttgttgttcttctttttcttgttcttcttgctttttgttt 528
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcatcattgataacgtttgttgttgttcttctttttcttgttcttcttgctttttgttt 744
Query: 529 tgatgctagccattctgactggagtgagatgaaagctcagtgaaggttgggtgtagtggc 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 tgatgctagccattctgactggagtgagatgaaagctcagtgaaggttgggtatagtggc 804
Query: 589 acacaactttaattccagcacttgggaggcagaggcaggtggacctctgagctcaagtca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acacaactttaattccagcacttgggaggcagaggcaggtggacctctgagctcaagtca 864
Query: 649 gcctggtctatgttgataaa 668
||||||||||||||||||||
Sbjct: 865 gcctggtctatgttgataaa 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1073
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1063
Effective search space: 699454
Effective search space used: 699454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_d01.g1 MSMg01no156_d01.g1 CHROMAT_FILE:
MSMg01no156_d01.g1 PHD_FILE: MSMg01no156_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:15 2005
(642 letters)
>mm_chr12_80623920_80624960
Length = 1041
Score = 1183 bits (612), Expect = 0.0
Identities = 632/642 (98%), Gaps = 8/642 (1%)
Strand = Plus / Minus
Query: 1 caggtaaccaatccttcgggccatgttcggaggttcagcacagccatgtatggagtgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caggtaaccaatccttcgggccatgttcggaggttcagcacagccatgtatggagtgcta 634
Query: 61 gcctagaatgggttctaaatacttgtatatttcatttttagctgctgatggttctgttgt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gcctagaacgggttctaaatacttgtatatttcatttttagctgctgatggttctgttgt 574
Query: 121 tccccaccatcccaacagcagtacccaaagtaagtcttcctcagactctaataccccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tccccaccatcccaacagcagtacccaaagtaagtcttcctcagactctaataccccttt 514
Query: 181 gaattgaagagaggttatgaagtcagcttgggaactcttactgctgagggtttaaacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattgaagagaggttatgaagtcagcttgggaactcttactgctgagggtttaaacttt 454
Query: 241 cacacacacacacaaaaagagctacaaaacacttctgaaggaaaaaaaaaatgttaccaa 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 453 cacacacacacacaaaaagagctacaaaacacttctgaagg-aaaaaaaaatgttaccaa 395
Query: 301 actttctatttttgaaactgtctagaaacttgggggcatgcactattatcaataaggaaa 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agtttctatttttgaaactgtctagaaacttgggggcatgcactattatcaataaggaaa 335
Query: 361 ttttataattcattgtagcttgaacacatgcttccccaaatacttcatgaataaacttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttttataattcattgtagcttgaacacatgcttccccaaatacttcatgaataaacttca 275
Query: 421 catagtagataacgacctattagaatgaaaattaactatgatttaccatagagcctccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 catagtagataacgacctattagaatgaaaattaactatgatttaccatagagcctccat 215
Query: 481 taagaaaaatactcnaaaaaaaaaaagaaaaaaaagaaaaaaaagaaaaatactcaagcc 540
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 214 taagaaaaatactc------aaaaaa-aaaaaaaagaaaaaaaagaaaaatactcaagcc 162
Query: 541 tctgagagcactgcatgtgcatcttaactgacaaatgctaaaacccaagcagggccacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tctgagagcactgcatgtgcatcttaactgacaaatgctaaaacccaagcagggccacat 102
Query: 601 aagctaccatgggcatcatatacgctggagacagtgtcttca 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aagctaccatgggcatcatatacgctggagacagtgtcttca 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space: 651592
Effective search space used: 651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
