BAC Information

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BAC

Clone NameMSMg01-156H16
Chromosome12 (Build37)
Map Location 45,382,832 - 45,383,144
singlet/doubletsinglet
Overlap genePnpla8
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062
Downstream geneNrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156H16.T7 (MSMg01no156_h16.b1)MSMg01-156H16.TJ (MSMg01no156_h16.g1)
ACCAG357211AG357212
length743745
length of high quality
(start - end)
318 (46 - 363)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no156_h16.b1 PHD_FILE: MSMg01no156_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:37 2005CHROMAT_FILE: MSMg01no156_h16.g1 PHD_FILE: MSMg01no156_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGACATCTCCTACTAGGTTTTTCTAATTATACAGTTTCTCTTT
TTATTATTCAATTATTCACTAGTTTAAGACATCAGATTTTTAGTACTCTG
AAGGCAAGGGTCAGGCCTTTATTTAATCTGTTGTGTATCTTTATAGACTG
CTCAATCCACAGTGAACATGGTATGACGTGTTGGGGGCTATACACAGGTT
ACTAAAGAACTTCCAGCTTAAAGCAAGAAATGGCCATGTCAAGACTACCT
CCCATAATCTAGTAATAACTGCTCATTAAAGAGGCTTCCTAAGTTCCCCT
ATCTAGTAAATGTTTCTTTATATCCCCCCCCCGCCTGGTGAAAACCCAGT
GGCTAATGTGATTGCTGCCGCCCCATTAAGACCCAAGTTATACATGTAAG
CTAACCACGCCCATGGAGGTGGGGCAGAGACGGGAGAACTCCAGGTGCTC
ACTGCTCCCTGTCTACCCAGTGCTAAGCCAGTGGTTAGGTGAGAGACCTG
TTTCAAAAAACAACAGTGACAAAAGAAGACATTTGATGCTGACTTTTAGC
CTATACACACATACACACCATATTAGACTGTGTGTGGCAGCTTGCCAGTG
GTTCATCACTATAATAGAGAAAAACATATCTAAGACGGAATAACCCTCCA
TAAACTAGAAAGATAACGTAGGCCATTCATTGAAAAATAAAAA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAATTCTGAATAACTATGCTACA
AATAAAAGGGCAGCCACATTAATTAAAGAAACTTTAGTAAAGCTCAAACC
ACACATTGCACCTCACACAATAATAGTGGAAGACTTCAACAACCCACTCT
CACCAATGGACAGATCCGGGAAACAGAAACTAAACGAGACACAGGGACAC
TAACAGAAGTTATGAAGCAAATGGATTTAATAGATATCTACAGAAAATTT
TATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTC
CTCCAAAATTGACCACTTAATTAGTCACACAACACGCCTCCACAGATACA
AAAATATTGAAATTATTCCATGCCCCCTATGTGATCACCACAGACTAAGG
CTGATCTTCAATAACAGCATAAATAATAGAAAGCCAACATTCACGTGGAA
ACTGAACAACACTCTACTCAATGAGTCCTTGGTCAAGGATGAAATAAAGA
AAGAAATTAAAGACTTTTTTGAGTTTAATGAAAATGAAGCCACAACATAC
CCACACTAATGGGACACAATGAAGGCAGTCCTAAGAGGAAAACTCATGTC
CTGAGTGCCTCCAATAAGAAACTAGAGAGAGCATACACTAGCAGACTGAC
AGCACACCTAGAAGCTCTAGAACTAAAGATAGCAAATTCACCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_h16.b1 MSMg01no156_h16.b1 CHROMAT_FILE:
MSMg01no156_h16.b1 PHD_FILE: MSMg01no156_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:37 2005
         (318 letters)



>mm_chr12_45382628_45383345
          Length = 718

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagacatctcctactaggtttttctaattatacagtttctctttttattattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcagagacatctcctactaggtttttctaattatacagtttctctttttattattc 458

                                                                       
Query: 65  aattattcactagtttaagacatcagatttttagtactctgaaggcaagggtcaggcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aattattcactagtttaagacatcagatttttagtactctgaaggcaagggtcaggcctt 398

                                                                       
Query: 125 tatttaatctgttgtgtatctttatagactgctcaatccacagtgaacatggtatgacgt 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 397 tatttaatctgttgtgtatctttatagactgctcagtccacagtgaacatggtatgacgt 338

                                                                       
Query: 185 gttgggggctatacacaggttactaaagaacttccagcttaaagcaagaaatggccatgt 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gttgggggctatacacgggttactaaagaacttccagcttaaagcaagaaatggccatgt 278

                                                                       
Query: 245 caagactacctcccataatctagtaataactgctcattaaagaggcttcctaagttcccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 caagactacctcccataatctagtaataactgctcattaaagaggcttcctaagttcccc 218

                        
Query: 305 tatctagtaaatg 317
           |||||||||||||
Sbjct: 217 tatctagtaaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)