BAC Information

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BAC

Clone NameMSMg01-157D19
Chromosome12 (Build37)
Map Location 47,725,649 - 47,725,940
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157D19.T7 (MSMg01no157_d19.b1)MSMg01-157D19.TJ (MSMg01no157_d19.g1)
ACCAG357772AG357773
length739739
length of high quality
(start - end)
323 (36 - 358)293 (67 - 359)
definitionCHROMAT_FILE: MSMg01no157_d19.b1 PHD_FILE: MSMg01no157_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:32 2005CHROMAT_FILE: MSMg01no157_d19.g1 PHD_FILE: MSMg01no157_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAGC
AGTTGATATAACATGCACAAGACTGTGCAGGCCCAGGTCAGACAGGAAGA
GAGCATGAAATCTCACTCCTAGCTAAGAAGCTATTGGATACTGATAATTA
CTGGGAGAAAGAGAGTTCATTTTCTTTAAGAATGTGGTCCCTGATAGATT
TTCTACCTGCCAGTTAACAGCATGCATCCATGAGTAGATGGGAAGCACAA
ATAGTACTAGATAGGTTAAAAACAGTGAGGGCTGTGAAAAACAAGGTTTG
AGTGGATAGAGAGGGGAGGTGTATACCTGGTAGGAGTGGGCGAGCATGTA
AAAATGATTTTTGTATATCTTACACAAATCTCAAAGAACCAAAAGAAAAA
TATTAAAAATATCAAAGAGTGTGAAAAAGAAAAAGAGGTTGCAAAGTTTA
AAATAACTGCCAAGTGCACTCTTTCCGGAGGATGTGTGAGTTACTTTCCA
CTTAATACATTCATGGTTAATATCCTGCTAAGTGACTGGGTCAGAGCTAA
ACCTGCTTCTAAGGAATCATGCCTTCTCTGTCTGCACAGGAGGATCCCAT
GCCCTATATTCACTGCCAGGATGGATTGGCCTAGATCAAATGCTCCACAC
AGAGAGGGTTGTGGACAAAAGCCCCAGACCTTCCTATACTGCTGCATTAC
TACCACACTAACTCTACCAGCCTCTGTCAGGTTTTATTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTTTGAACTCAAAGGAATTGTTTTTATAGGG
CTAGAAAATACCTTTCATATACAGGCAGGTGAGTTCAGAACTTTGAGGAT
CAAGACTATTTCAGAGTATGAGTGGACTGTTGTGAATTGTGATGAATATG
ATGCTGCATTCTCTATAGTTGTTTCTAAGAATGAAGAAGAAACTGGAGGG
TATTCCAAACAAGTAAAAGAAATGATTTTTCTAAATGCTTTTGGTTTTGT
CATGCCTACCTTCACATATTCATATTTTAGGTATGGTCTCTGTACTGGCT
AGTTTTGTTTTTTCTTGCCACACCCGCGAGTTATCACAGAGAAGGGAGCT
TCAGTTGAGGAAATGCCTTCATGAGATCCAACTGTAAGGCATTTTCTCAA
TTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCGCTGGGCT
AGTAGTCTTGGGTTCCATAAGAGAACAGGCTGAGCAAGCCAGGAGAAGCA
AGCCAGTAAGTAACATCCCTCCATGGCCTCTGCATCCTGCTTCCTGACCT
GCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGT
GTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGT
TTGTGCAGGAATAGAAACCCTGACTAAGATAAATTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_d19.g1 MSMg01no157_d19.g1 CHROMAT_FILE:
MSMg01no157_d19.g1 PHD_FILE: MSMg01no157_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:32 2005
         (293 letters)



>mm_chr12_47725449_47726141
          Length = 693

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtttgaactcaaaggaattgtttttatagggctagaaaatacctttcatatacaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tctgtttgaactcaaaggaattgtttttatagggctagaaaatacctttcatatacaggc 433

                                                                       
Query: 61  aggtgagttcagaactttgaggatcaagactatttcagagtatgagtggactgttgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aggtgagttcagaactttgaggatcaagactatttcagagtatgagtggactgttgtgaa 373

                                                                       
Query: 121 ttgtgatgaatatgatgctgcattctctatagttgtttctaagaatgaagaagaaactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgtgatgaatatgatgctgcattctctatagttgtttctaagaatgaagaagaaactgg 313

                                                                       
Query: 181 agggtattccaaacaagtaaaagaaatgatttttctaaatgcttttggttttgtcatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agggtattccaaacaagtaaaagaaatgatttttctaaatgcttttggttttgtcatgcc 253

                                                               
Query: 241 taccttcacatattcatattttaggtatggtctctgtactggctagttttgt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taccttcacatattcatattttaggtatggtctctgtactggctagttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)