BAC Information

Click to search

BAC

Clone NameMSMg01-158J19
Chromosome12 (Build37)
Map Location 112,714,503 - 112,714,786
singlet/doubletsinglet
Overlap genenone
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2
Downstream geneGm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158J19.T7 (MSMg01no158_j19.b1)MSMg01-158J19.TJ (MSMg01no158_j19.g1)
ACCAG358780AG358781
length749743
length of high quality
(start - end)
320 (46 - 365)284 (70 - 353)
definitionCHROMAT_FILE: MSMg01no158_j19.b1 PHD_FILE: MSMg01no158_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:09 2005CHROMAT_FILE: MSMg01no158_j19.g1 PHD_FILE: MSMg01no158_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGTAAAAGCATCATAGGGAAGAAAGGGTTTGCTTCCAGATTCC
AGCCCATTGTCTCAGAGAGCCTAAGAGCAGGAGCCTGAAGCATCTAGTCC
ATTCTGTCCATGCCAAGAATGGAGGGAAACACATGCCTGCCTGCCTAGCA
CTCAGCTAGCTCTCCCTGTCCCCACTCACACACAACCCTGGGTTCAAACC
CAGGGAATGTCGCTGCCGCTTTTAGCCTGGTTCTTCCCACATCAGTTAAG
GCAACCCAGACAAGCTTCTACTTGCTTCAGACCGGCCTTTACTCTAGGCT
GTGTCAAGTATCCTTTCATAGTTGGCACCCCCACACCTGCCCAGCATATG
TGAGGNTCTAAGATGAACCCCCCCCCCCACACAACAAAATAGAATTCCTA
GGAAGTCTATGGTAAGTTGAGGAACTCCGATGAGTCCGGTGAACTGTAGA
GATGCTGCCCCCCGTGACCAATCTGGACATTCCCAGTTCCTGATCTCAAC
ACTCAGCCCACAACTACAACCACCACTCGCCCTGGTGGCTCACACTGTTA
ACCCCCCCCCCCCTGCGGCCTGGCCCAGGCGGATCGTTGAGTTCCCGCCC
AGCCCCGTTTCACAGAGCGACATCCAGGACATCCTGACAACTACCTACAC
AAACCATGCCCGTCCCGTTTGTCCTCCCCCCATTGTCTCTCCCCACTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATTTTTATTACTATAACTAGTATTTTTTTT
TAAGATAAAATCTGACTATGTACCCCCAGGCTGGTCTCGAACTTGAGACA
ATCCTGCCTCTGCCTCCTGGGGGCTTGCTGAATTCCCAGCATGAGGCATC
TTGCTTCCTGCAAATGCATTAAAAACCTCGGTCATTGCTTAGTGCTCCCC
CATCAACCATTTTGTCTGAGCTTCTGAATCGCCTGGGGGTTATCCGAGGT
TCCAGGACCCTAGCCTCTTAGAACGTGAGACCTTGATCTGAGAAACCACA
CCTTTTGATCCCGCCCCATCCGTTGAGCCTGTAGACATGCTGGCTACTCC
TGGTTGGCGGTTAGGGAGAGACAGAAAAATAGAGAATGACATCACACAGT
TTAGGATGTTGGAGGACACCTGCCTTGGTCTTCCCTGTGCTTTCCCTTGT
ACCCCACGGCCCTTGCCACAGTGCTCTCAGACCTCTGTGGTCCCCTGTGC
CTTCAGTCTCAAGAGGATGCTCAGGGAGAGTAAGCCCTGAGGGTCATCGT
GAGGCTTATCTAGAAGAGAGGGACGAGAGAGGCTGCCACTGCATGTTGGT
CTTCTGTGTAGTGGGCAGTTGGTGTTCCCGCCTCATCTCTCTGCATTGTA
CTGGAGGGAGACCCTGATCTTGTCTTGCTCTGTCACTTTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_j19.g1 MSMg01no158_j19.g1 CHROMAT_FILE:
MSMg01no158_j19.g1 PHD_FILE: MSMg01no158_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:09 2005
         (284 letters)



>mm_chr12_112714304_112714987
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttttattactataactagta-tttttttttaagataaaatctgactatgtaccccca 59
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 200 tatttttattactataactagtatttttttttttagataaaatctgactatgtaccccca 259

                                                                       
Query: 60  ggctggtctcgaacttgagacaatcctgcctctgcctcctgggggcttgctgaattccca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggctggtctcgaacttgagacaatcctgcctctgcctcctgggggcttgctgaattccca 319

                                                                       
Query: 120 gcatgaggcatcttgcttcctgcaaatgcattaaaaacctcggtcattgcttagtgctcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcatgaggcatcttgcttcctgcaaatgcattaaaaacctcggtcattgcttagtgctcc 379

                                                                       
Query: 180 cccatcaaccattttgtctgagcttctgaatcgcctgggggttatccgaggttccaggac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccatcaaccattttgtctgagcttctgaatcgcctgggggttatccgaggttccaggac 439

                                                       
Query: 240 cctagcctcttagaacgtgagaccttgatctgagaaaccacacc 283
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctagcctcttagaacgtgagaccttgatctgagaaaccacacc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)