BAC Information

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BAC

Clone NameMSMg01-159L22
Chromosome12 (Build37)
Map Location 107,144,526 - 107,144,837
singlet/doubletsinglet
Overlap genenone
Upstream gene4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
Downstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159L22.T7 (MSMg01no159_l22.b1)MSMg01-159L22.TJ (MSMg01no159_l22.g1)
ACCAG359601AG359602
length740746
length of high quality
(start - end)
318 (43 - 360)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no159_l22.b1 PHD_FILE: MSMg01no159_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:31 2005CHROMAT_FILE: MSMg01no159_l22.g1 PHD_FILE: MSMg01no159_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACAGTGTGGATGTGCACACATGTGCAACACCTGGAGCTTCAGGGACT
TCCTGTCAGCAGAAGTCCTCAAGTCACCACACAGCTATTCAGTCACCTCC
ACGGGAACAAGAAGAACACATTGTGGGGCCGGGCCGTGGGGTGGGAGACA
CAACAGCACACTGCCTCTTCTGTTACCAGAAATGCCTCTGATCTAAGGAT
GCACAGCAACACTGGACCAGACTGTTGAGGCGTTGTGAAGAGTGAACCCT
CCCTGCTCTGCATCAAAAGGCCTCGGGTCACTGACATTGGGTTAAAAGGT
AACTGTCAAGTATACTGCCCCCCGCCCTCTGTGTGTGTGTGCATGTGTGT
GCACACGTGTATGCACGCACGTGAGAAAGAGTGTGCGCTTGAGTGTGCGT
GTGTGCACATGTGTGCACGTGTGTGCGTGTGTGTGTGTGTGCCTGGGCAT
GCATTCTGTGTCTGTGTTCAAGTGTGCATGTACTCTGTGTTGTATGTGCA
CATGTGTGTGCACATGTGCATGTGTGTGTATATACTGTGTGTGTGTGGGG
GTGCATGCAGGAAAGGATCCACAGTTAGAGGCTGGTCAGCCTCGGCTGTT
TTCCTCAAGCCCAATCTACCTTGTTTTTGGGGACAGTGTCTCCCACTGAC
CAAATACGCTGGGCTGGCTGGTTACCCCCCCCTATAAGTC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGACTACACAGAGAA
ACCCTGTCTCAAAAAAAAACCCTAAACAAACAAACAAACAAACAAATAAG
CCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGAC
AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG
GACAGCCAAGACTATACAGAGAAACCCTGTCTCGAAAACCCAAAAAAAAA
AAAAAAAAACCAAACAAATAAAAAGATATAAAGCAGAGGGGAAGGCTCCA
TATGATAGCAGGGTGTTCTCTGCACACCACCCCTGGATGGGTATGGCGGC
CCACCTGTAATCCCAGCTGCACAAGGAAGGTTACCTAAGCAAGCAGGCTA
GATAAACTGGTTGTTTATCAGTGAGCTCTAGGTTAAATCGAGATACCATG
CCTTAATTAACAACTGGAGAGCAATGAAAGACTCCTGAGAGATCAACCTC
AGCTTCCACATGCATGTGCACATATGTCTATGTGCACCTATAACATATGA
GTGCCCACACATATGGGACACACACACACACACACACACATATGCGCATG
CATGTACGCACGCATGTACTCACATACACACCATGTACGCAGACAAAGGC
AAACAAATTCAGACTCTAGTACAGTCCCTTCCTGGGCCCATCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_l22.b1 MSMg01no159_l22.b1 CHROMAT_FILE:
MSMg01no159_l22.b1 PHD_FILE: MSMg01no159_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:31 2005
         (318 letters)



>mm_chr12_107144322_107145040
          Length = 719

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacagtgtggatgtgcacacatgtgcaacacctggagcttcagggacttcctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcaacagtgtggatgtgcacacatgtgcaacacctggagcttcagggacttcctgt 457

                                                                       
Query: 65  cagcagaa-gtcctcaagtcaccacacagctattcagtcacctccacgggaacaagaaga 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cagcagaaggtcctcaagtcaccacacagctattcagtcacctccacgggaacaagaaga 397

                                                                       
Query: 124 acacattgtggggccgggccgtggggtgggagacacaacagcacactgcctcttctgtta 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 396 acacattgtggggccgggccgtggggtgggagacacaacagcgcactgcctcttctgtta 337

                                                                       
Query: 184 ccagaaatgcctctgatctaaggatgcacagcaacactggaccagactgttgaggcgttg 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 336 ccagaaatgcctctgatctaaggatgcacagcaacactgggccagactgttgaggcgttg 277

                                                                       
Query: 244 tgaagagtgaaccctccctgctctgcatcaaaaggcctcgggtcactgacattgggttaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgaagagtgaaccctccctgctctgcatcaaaaggcctcgggtcactgacattgggttaa 217

                       
Query: 304 aaggtaactgtc 315
           ||||||||||||
Sbjct: 216 aaggtaactgtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)