BAC Information

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BAC

Clone NameMSMg01-159O14
Chromosome12 (Build37)
Map Location 105,383,619 - 105,383,903
singlet/doubletsinglet
Overlap genenone
Upstream gene9030205A07Rik, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b
Downstream geneSerpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159O14.T7 (MSMg01no159_o14.b1)MSMg01-159O14.TJ (MSMg01no159_o14.g1)
ACCAG359720AG359721
length748744
length of high quality
(start - end)
324 (46 - 369)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no159_o14.b1 PHD_FILE: MSMg01no159_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:43 2005CHROMAT_FILE: MSMg01no159_o14.g1 PHD_FILE: MSMg01no159_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGAAGCAGGCCTGGATAAAGACATCTCAGAAACCCTTGGGTAG
CTCATTTGTTAAATAAAATAATAATAGTAATAATAATAATAATAATAATA
AAGCAAAACAGTTGTTCCCATTTCTCCTAACCCTAGCCATGGACAATGGC
TGTATAGATTTCATTTGTGCGTGACTGCTTTTCAGTTGGCCTTGGTGTGC
ATAATTATTCTATTATATCCGACTTTCCTATTTCCTTCTCCTTCTGCTCT
GGTGAATTCTGTGAAACTAGATATTTCTTGATGTAATGATTCTTAAACAA
TCAAAACTTGTTTTTTTTTACACCCCCCCCCCCAGTCCTAATGACCAGGT
GCATGTTGTGCGCCCCCCCCACGAAAACAATGAAATAACCGCGCAATGGT
AGTGTTGTATTAATGCTTGACTTGCTATTAAAGTTTGAAGACATCATGTT
TAGCCATATTACACAACGAACCTTATCCTTCTACTGCTAAACGCCATATT
TTGTCCTTTTACATAAAAGTGAATGATATTATTTGCAATTATGTTTCTAC
ATTATTTTCATAAGAATCATTCCCGTTCTTTCTCCTTTATTGATTAAAGT
TTTTACCACCCTCCTATTTTTTTATTTTAAAATTAACCAATTTATTATTT
ATAATTAACAGCTTAGTTTTTTTTCCCCTTAACTATATCTTTTCTTCC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGGCCTGGAAACATAGCTAGTGG
TGTACATGGAGAAGGACAGCTATACATTCAGGGTGAGACTTGAGACTCCT
GAGAACACTCATTGAGCAGTGGACATGGGGTCATCAGAGACTTGGACCCT
GGTGAGCCACACTCAGGACCCCAATCCCTAGTGAGCAATCAGCTACCCTT
CCCTGATGGCCATGAGATGAGAGAAGATGACTCATCTATTGAAGCCATCA
AATGTCCCAACAGTCTTCCTAATAATGTCCTAACAGTCTTTTAGGCATCA
CCCTAAGACTGTTTTTTTCCACACGCCGCCCCTTCCTAACTATATCCCTC
CATCCTTTCTGGACGCACCCCGCATGACTAAGGACCCTGTTGCTGAATCC
ATCTCCTTCTGTTGGTGAGCTGGCTCTGGAACTTGTGGGAAAATCTGACC
CCATCTAGGGACTAGGACTTCAGTCTAGAACCTAGTTTACTTCTCTTCCC
TCCCTGCGCCATGAGGGTTTTTCCTCATTTGTCCATCTGTTGCTGTCTTG
CCCCTGTATTTCTTTTTATGTTGCTTTCCCCTATTTCTATTTAGGCTACC
TTTATTGTTGGCATCCACATATATTTTTTGAAAATCCTATTACTTCTCCC
CCCCTTTTTTTTTTTTATTTTTTATCTGTTTTTTTCACTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_o14.g1 MSMg01no159_o14.g1 CHROMAT_FILE:
MSMg01no159_o14.g1 PHD_FILE: MSMg01no159_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:43 2005
         (285 letters)



>mm_chr12_105383419_105384103
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgggcctggaaacatagctagtggtgtacatggagaaggacagctatacattcagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttgggcctggaaacatagctagtggtgtacatggagaaggacagctatacattcagggt 426

                                                                       
Query: 61  gagacttgagactcctgagaacactcattgagcagtggacatggggtcatcagagacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gagacttgagactcctgagaacactcattgagcagtggacatggggtcatcagagacttg 366

                                                                       
Query: 121 gaccctggtgagccacactcaggaccccaatccctagtgagcaatcagctacccttccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaccctggtgagccacactcaggaccccaatccctagtgagcaatcagctacccttccct 306

                                                                       
Query: 181 gatggccatgagatgagagaagatgactcatctattgaagccatcaaatgtcccaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gatggccatgagatgagagaagatgactcatctattgaagccatcaaatgtcccaacagt 246

                                                        
Query: 241 cttcctaataatgtcctaacagtcttttaggcatcaccctaagac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttcctaataatgtcctaacagtcttttaggcatcaccctaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)