BAC Information

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BAC

Clone NameMSMg01-160C21
Chromosome12 (Build37)
Map Location 47,889,841 - 48,029,066
singlet/doubletdoublet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190, EG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160C21.T7 (MSMg01no160_c21.b1)MSMg01-160C21.TJ (MSMg01no160_c21.g1)
ACCAG359921AG359922
length727743
length of high quality
(start - end)		295 (433 - 727)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no160_c21.b1 PHD_FILE: MSMg01no160_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:04 2005CHROMAT_FILE: MSMg01no160_c21.g1 PHD_FILE: MSMg01no160_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,028,772 - 48,029,066)(47,889,841 - 47,890,130)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAATCTTAAAATATATACCCTAATTATTTTTATGCATACATAT
CTATTCAGTTCAGAAGACAGACACATTGTATATAAAATATCCATTTTATG
AACAGCACTACTCTAAAATAAGAAGTAGCCATTAAAAAAACACTATAGGC
ATATTTCTAACAACAATAAAGAATCAATACAAAGAACCAATATGTGTCTA
TATTTGCAGTCTGTTCTATTCTCTCACAGTGACATTGGATGCTTAAGCTT
TAGCAGAGTTTAATTTCCCTCTCTTGCCCTCTTTTCCCCATCTTCTACTC
CCCCTACTCTTTTTTTCCATCCCCCCCCCCCTCTATAAAGGAAAACACAC
AACTTTCTATGTATTACACCTCTCCCAACAATAAGGATTTTATTGTCAAT
CTAAAAACAGCTGACATAGCCTAAAAGTAGGACCATAAAAATAAAATACA
GCTCACATATTCCACTTGCCACACTTGAAAGAAATGAGATGTTCTCCCAA
TTGTTATGGCAGCTGACAGTGCTACATTTGGGAATTTGCAACAAAGCAAA
GAGGAAAACATATCTACGGGGTCTTAAAGCAGCTCCTCACTCTTCAGATG
AAATGGCTCGGCTTATAAGGCTATGTATCAGGATCCTATCTTCCTGGTGA
AAATCATCCTCCTATTTATTTACTTGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTTTTCCTTTTAAAGAGAAC
ATGAAGTTGCAGAGAAAAAGGGTGGGGTCCTAGAAAAAGATTTGGAGAGG
AAAGACTGTGAGTATATTCCATCAAAATATTACATGTATCTATGGAATTT
TTAAACTATTAAGAAATTAATTAAGAAAATTTTAAACGTAAAAATATTCT
AACAGCCAGAGGAGAAAATAACAAAACAATTTAGCAAAATTTTAAAACTA
CAGTCAATATAAATATTAAGGGCATATAATAATAACACAATAATATTAAT
ATTAGTATTAATTAATGATGATGACGACACAAAATAACTTATATTTTTAG
TTTTCAATTATGTGGATATCCCCCCCACAAAAAAAAAAAAAAANNNTTGT
CTGNTATCATTCTTATTAATTCTCTCCATAAACCTCTTTTTTCCCCTATC
ACCTTTTATCTTTTCACCTCTATTACTCTAATTTTTTCCCAATCCTCTTT
TTATCATACCCCCTTCTTTTATTTTCTATCCCCCCTTCCCTTCTCTTTTA
TTTTTTTTCTCTCTTTTTTATTCCTTTTCCTTCCCCCCCCTTTATTCTTT
TTATTCCCCTTCTTTTTTTTCTCTTCTTCCTCCCCCTCTTTTATTTCCCC
CCCTCCCCCTACCTTCTTATTTTCTTTTTCCACCTCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_c21.b1 MSMg01no160_c21.b1 CHROMAT_FILE:
MSMg01no160_c21.b1 PHD_FILE: MSMg01no160_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:04 2005
         (295 letters)



>mm_chr12_48028572_48029266
          Length = 695

 Score =  516 bits (267), Expect = e-151
 Identities = 288/295 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggattttattgtcaatctaaaaacagctgacatagcctaaaagtaggaccataaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaggattttattgtcaatctaaaaacagctgacatagcctaaaagtaggaccataaaaat 436

                                                                       
Query: 61  aaaatacagctcacatattccacttgccacacttgaaagaaatgagatgttctcccaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaatacagctcacatattccacttgccacacttgaaagaaatgagatgttctcccaatt 376

                                                                       
Query: 121 gttatggcagctgacagtgctacatttgggaatttgcaacaaagcaaagaggaaaacata 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 375 gttatggcagctgacagtgctacatttgggaatttgcaacaaaggaaagaggaaaacata 316

                                                                       
Query: 181 tctacggggtcttaaagcagctcctcactcttcagatgaaatggctcggcttataaggct 240
           |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 315 tctacggggtcttaaagcagctcctcacacttcagatgaaatggctgggtttataaggct 256

                                                                  
Query: 241 atgtatcaggatcctatcttcctggtgaaaatcatcctcctatttatttacttga 295
           | |||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 255 acgtatcaggatcctatcttcctgatgaaaatcatcctcccatttatttacttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no160_c21.g1 MSMg01no160_c21.g1 CHROMAT_FILE:
MSMg01no160_c21.g1 PHD_FILE: MSMg01no160_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:04 2005
         (292 letters)



>mm_chr12_47889639_47890330
          Length = 692

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttttttccttttaaagagaacatgaagttgcagagaaaaagggtggggtcctagaaaaa 62
           ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct: 203 tttttttccttttaaagagaacatgaagttgcaaagaaaaaaggtagggtcctagaaaaa 262

                                                                       
Query: 63  gatttggagaggaaagactgtgagtatattccatcaaaatattacatgtatctatggaat 122
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 263 gatttggagaggaaagactgtgaatatattccatcaaaatattatatgtatctatggaat 322

                                                                       
Query: 123 ttttaaactattaagaaattaattaagaaaattttaaacgtaaaaatattctaacagcca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttaaactattaagaaattaattaagaaaattttaaacgtaaaaatattctaacagcca 382

                                                                       
Query: 183 gaggagaaaataacaaaacaatttagcaaaattttaaaactacagtcaatataaatatta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaggagaaaataacaaaacaatttagcaaaattttaaaactacagtcaatataaatatta 442

                                                             
Query: 243 agggcatataataataacacaataatattaatattagtattaattaatga 292
           |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 443 agggcatataataataacacaataatattaatatcaatattaattaatga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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