BAC Information

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BAC

Clone NameMSMg01-160G21
Chromosome12 (Build37)
Map Location 41,213,636 - 41,213,879
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160G21.T7 (MSMg01no160_g21.b1)MSMg01-160G21.TJ (MSMg01no160_g21.g1)
ACCAG360103AG360104
length721748
length of high quality
(start - end)
290 (430 - 719)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no160_g21.b1 PHD_FILE: MSMg01no160_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:23 2005CHROMAT_FILE: MSMg01no160_g21.g1 PHD_FILE: MSMg01no160_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATCACAAATAGCATGGAGCATTTCCCCCAGGCTTTAAAGATGG
CCCTGCCAGAAGACTTTAAACCACTGCTCCCTTTGGACCCGTCTTGGTTT
ACCTTGGATTTTGGCATGTCTCTTCCAGTAGGTTGTAGTGAAAGTTGTAA
TGTTATTCAATCTAAGGTCATTGCACTCACTCTCTCGATTTTAAATGGAC
TGTATACAACCTAAACAATCCAAAGTATGAAATTGTTCACTTACCAACCT
TTGCAGTACCCTGTCTAACCCACTTACATGAAATGAACATTATACTAGTC
ACGAATTANTTTGGTCCTTTGCTTTNCCCTAGTTCTATGTAGTGTCATAT
AGTCAGTCAAGCCCCAACAAAAAAAAAAAACATTGATACAAATCTCAACT
ATAGTCTTAATAACATATCTTTCCTATGTATGTGTATAGGTTGTTTGCCT
GCATTTATGTCTGTGTAGAAGTGCATGCATGGGTCCTGTGAAGGCCAGGT
AAGCGCATGAGATTACTCAGGAATGGGAGTTAAAGGAGTTTGTGAGCAAC
CATGTGGGTACTGGGAATTGAACCTGGGTCCTCTGGAAGAGCAGTCAATT
CTCTTAACCACTGAGTTACATCCCTAGTCCCCCAGTCACATATATGTTAG
ATCTCATGGGCAAGTCAGTGG
CGAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGTAGAACCCACAGGTGCA
GAGGGATATCAATATGTGTTAGATCTTAATGTACAGGTAAGACAGATTGA
TGCAGGATATCATTGTCAGAGAGGCAACATGGTAGAATGATGGCCAAAGC
CATGCTTTAATAAGTAGAACTGAGGGGTTTCTGTGCTGCTGAGGAGTTTG
TTTAGTGAAGCAGGGAAGAAACAGCTCAAAAGTTGGAAGAGGCGTGAAAT
GATGGAGTGGAGTGGAGGCGTTATTTGTTGGAGTNCCCCCCTNNNNNNNN
NNNNTTTTTTTTTTTCTCCNNNCCCCNNCCCAAANNNAAAAANAAAGNAA
GGGGGGGGGTTTTGTCCCCCCAAAAAAAAAAAAAANNNNGGGGGGGGGGG
GCCGGCCCCCCCCCCCCCCCGCCCCCCCCCCTCCTCCCCCCTCCCCCCGC
CCCCCCCTTCCTTTTCCCCCTTTTTTCCTTCCCCCCCTTCCCCCTCTTTC
TTCTCCCCCCTTCCCTTCTCTTTTTCTCTTTTTCTCCCCCTTCCTTCTTC
TTTCTTTTTCCGTCCCCCATCTTTTCCCTGCCTCCCTCCCCTCCTCTTTT
GTATCTTATGTACCACACCCCCTATTACTCATCATCTTCCTCCCCATTTT
TTTCCCACCCCCCCTTACCACTCATATATTATTATTTTCCCTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_g21.g1 MSMg01no160_g21.g1 CHROMAT_FILE:
MSMg01no160_g21.g1 PHD_FILE: MSMg01no160_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:23 2005
         (244 letters)



>mm_chr12_41213436_41214079
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtgtagaacccacaggtgcagagggatatcaatatgtgttagatcttaatgtacagg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgtagaacgcacaggtgcagagggatatcaatatgtgttagatcttaatgtacagg 260

                                                                       
Query: 61  taagacagattgatgcaggatatcattgtcagagaggcaacatggtagaatgatggccaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 taagacagattgatgcaggatatcattgttagagaggcaacatggtagaatgatggccaa 320

                                                                       
Query: 121 agccatgctttaataagtagaactgaggggtttctgtgctgctgaggagtttgtttagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccatgctttaataagtagaactgaggggtttctgtgctgctgaggagtttgtttagtg 380

                                                                       
Query: 181 aagcagggaagaaacagctcaaaagttggaagaggcgtgaaatgatggagtggagtggag 240
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aagcagggaagaaacagctcagaagttgggagaggcgtgaaatgatggagtggagtggag 440

               
Query: 241 gcgt 244
           ||||
Sbjct: 441 gcgt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)