BAC Information

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BAC

Clone NameMSMg01-160P13
Chromosome12 (Build37)
Map Location 93,758,685 - 93,758,882
singlet/doubletsinglet
Overlap genenone
Upstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160P13.T7 (MSMg01no160_p13.b1)MSMg01-160P13.TJ (MSMg01no160_p13.g1)
ACCAG360499AG360500
length769709
length of high quality
(start - end)
202 (125 - 326)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no160_p13.b1 PHD_FILE: MSMg01no160_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:05 2005CHROMAT_FILE: MSMg01no160_p13.g1 PHD_FILE: MSMg01no160_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCCCTAAATACAGTAGGTTATTGTTATGTGGCTGTGTGTTCAGCCAT
GCCAGACTTGTGGGAAATAATGCAAAGGGTTTGGTAACTATAAGAAAGAG
AAAATGAATTATAAAATGTCAGAACCTGTCTACTTGGAGACAGTCTGGGT
AAAGCAGAATAGTCACATAAACCAATATTTACAAGGAACAATAATAAAGT
ATTTGTGAGAATATATAAAAGAATGTGTAATGACAATGAAACTTCACCCG
AGATGAGCATAGTGATAATTTTTAGTATATGGGGTCTTGTTTAGTTACCA
TCTCTTCAATTTGAATGAGTTCCCCCTTCTAACTCGCCTGAAATTTTGTA
TATTTTTGATATGGGTCCCCCCCCTTTTCATAAAAAAAAAAATTACCCTT
TCGCGGCGTCCTTTTTTATCCTTCGTAATCCTTTTTTCACAAGTCCCCCC
CACCATCCGTCTTTCTTTTTTATCTGCCCATCCTACTTTCTCACTATCAT
ATATTTCTTCATTTGTTATCCTCCCGTATCCTTCACCCCAAACTTATTTT
TACCCCTTCCTTCCTTTTTTCTCCCCATTTGTCCTTTAACTTTTTTTACA
TTCTCCTATAACCCTATTATTATCCTATATTACACGTCGCCCTATTTTTT
TTCATTTCACCGTTGTCATTCCCCCTTTTTTTTATATCTATATTCTTTTT
TCACCCTACACCCTTTTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGA
GAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATTCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAAAACCACTCTGGAAA
TCAGTCTGGTGGTTCCTCTGAAAATTGAACATAGTACTATGTCCAACAGA
GGATCCTGTTATACCTCTCCCGCCCATATATCCAGAAGATGTTCCAACTA
GTAAGAAGGACACCCGCCCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGA
CTGAATTTATGATATTTCTAGGCAAATGGATGGACCTGGAGGGCATCATC
CTGTGTGAAGTAACCTAGTCACAAAAGATCTTTTATGATATGTACTCCCT
GTTAAGTGGACATTAGCCCATAAAATTACTAAACCCAAGATACTAGATAC
CATTTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_p13.b1 MSMg01no160_p13.b1 CHROMAT_FILE:
MSMg01no160_p13.b1 PHD_FILE: MSMg01no160_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:05 2005
         (202 letters)



>mm_chr12_93758485_93759086
          Length = 602

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggtttggtaactataagaaagagaaaatgaattataaaatgtcagaacctgtctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagggtttggtaactataagaaagagaaaatgaattataaaatgtcagaacctgtctact 339

                                                                       
Query: 61  tggagacagtctgggtaaagcagaatagtcacataaaccaatatttacaaggaacaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tggagacagtctgggtaaagcagaatagtcacataaaccaatatttacaaggaacaataa 279

                                                                       
Query: 121 taaagtatttgtgagaatatataaaagaatgtgtaatgacaatgaaacttcacccgagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taaagtatttgtgagaatatataaaagaatgtgtaatgacaatgaaacttcacccgagat 219

                             
Query: 181 gagcatagtgataatttt 198
           ||||||||||||||||||
Sbjct: 218 gagcatagtgataatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)