BAC Information

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BAC

Clone NameMSMg01-161F12
Chromosome12 (Build37)
Map Location 15,533,471 - 15,533,797
singlet/doubletsinglet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F12.T7 (MSMg01no161_f12.b1)MSMg01-161F12.TJ (MSMg01no161_f12.g1)
ACCAG360771AG360772
length1,2301,269
length of high quality
(start - end)
413 (42 - 454)327 (68 - 394)
definitionCHROMAT_FILE: MSMg01no161_f12.b1 PHD_FILE: MSMg01no161_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:50 2005CHROMAT_FILE: MSMg01no161_f12.g1 PHD_FILE: MSMg01no161_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACAGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTTAATGTTTTCTTTTGTTCTGAGCAGCCCTCGAGACCATGTTGTTC
AACAGGACACCATCTTTCTAAGAGATTGTCACCTGTGCTCCATCTTAGTT
TCTTTTCCTGCTACTGTGATAGGACATCCTGATAACAGCAACTTGAGAGA
CAAGGTGTTCATTCTGGATCAAAGTTCAAGGGCACAGTCCATTATGGGGA
ACTCAGGGTTTGTAAAGGCTGCCCATATCACATTCACAATAGGAAAGCAG
AAGGTGGAGCTAAGCTCACAGTCTCCCTTTTACAGGATTCCATGCCCAGG
GAATGGCACTCTGGACAAGAAGATGGATCTTCTCACATCAGTTAAAATAA
TTTATATAGTCCCCTACAGGCATGCCTAGAGGGCCTTATCTCCCAGATGA
CTTTTTATTCTCCCCCCCGACAGTTACACCCTCTCAGCTTGATAAAAAAG
TTAGCTGGCTGCCTATCAAAAAAGGAGCCCTAAGAGCCATTCTAGTTACT
TCATAGTTTCTGAGTTTATTTAGTCTTCAGTTCTTGTCTTCTTTTTTCTG
ATGCATTTTCTCTACCACTTGAGTTTCTTAGCTTGTATGTACAATATAGT
GTTATCCACCAGATGATTCGGCCTTTAAAAGGAAGACATGTCAGCTGAGG
GTACAACAGAATGTGACCTTATTTGGAAGTTGGGCTGATGCAGGTATAAT
TAAAGCATATGATGTCACTCTGGACTGGGGAGGATTCTTCATTTAATGTG
ACTGGTGTCCTTATTAAAAAAAAAAAAAAGGAGCCACATGGGGATAGAGT
GCCCAGGGACAAATGTGCATACAGGTTGGAAAGCAATGTGTATGCCAAAT
TGTCTAAAATACTAACAAAAGATTCAGGCAAATCTTCCCTAAAGAAATTC
ATATAGACACAGCCTTCAAGCCTTTGTGATTTCTATTCTAACCCTCAGGG
GGAAGGATGTATTTCTTGTTTCTGGCCTTTATTTTTTTATGTAAATTTTA
GGGCTTTTATAATCCTGTCATGTGCAAAATCTTTTTTTTATGTTTGATTT
TTATTTATACCGAATAATAATTTCACGGTTGTTTGCCTCTCTTCTAAAGC
TTCCTCTTTTTTTTGTAAAATCTTTCTTTTTCTATTCCTTCTTCCATATA
TTTTATTTTTTGTATCACTTCTTATGTCAT
NNTTATGAAGGAGGCTGGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGATTCTATGAAATTGCCCCATAAAGCTGGG
AGCTATGGATGGTTTCTGGGTAGAGTGGAGGTGTTATATATGCCATAGAA
TTAACAGCCTCGTGGTATTTTAAGATTGGGCAGAGACTAGTGGTGAAGGT
AACAAGTATATTACTGCAAATTCCATGTGGTGATTAATTTTTAAATTAAC
TAATAGACTCAATTATTCTACAAATAGGATGAGTTACTTTATTCAACAAT
TTTGTTTCATATCAATGTTATCTATAGATATGATGGAAAGAACATGCCTG
CCGCCATGAGTGTATCCCCCTGAGGATGAGCAAAGACAGCAGAGATTATT
TATCAAGACAAGAAAAAATACACATGAATATAGAAAGAGATAAATCTTTT
TTTTTCCCCCCCCCCAAAGGGGATGCTGTTACACACTAAAATAGGGCCTT
TACCTTTTCCTTGTAACCTGTAATAATTAGCAGCAATAACTGATTGTTAA
TGACAAGGGCAGCTGCTCCTACCTCCCTGGTGTATTGTAATTGGTTCACC
AAAAGGAAACTCAGCAGCTAAGAGCTATCTATTCGCTTTACAATTATTGT
ATAACATTACTTACTTTATCAGCTCATGGCGGAAGAGTAGTTCTCTGTCT
CATTGATATCTACTGCCAGTTCTGTTAACACGTGAGGGACTTCTGTACAC
ACCATTATCTCATACTCTTGAGGTCCAGTATGTTTTCTGTGCCTTTAGCT
CCTGGATAATCAGAGGAAAGACTTCCAGAAAGCACTTATCATTCTAAACC
ATTAATCCCCGGAAGAGTTATTTTTATTGACCGTGTCCTTTTTAGTTCAG
GTTTTGTGTTCAGACTCCTTTGTTCATTGTCCTGATATTTCCTAAAATTA
CCTTGTGGTCCTAATGCCCCCATATGGTAGTCCCTTTAAATTTTTATTCC
CTTATAAAAAATTTTTGTGTTAACCTTCTTTTCCAAATATGATCCCTGGT
TCTTTANAAATAAAATAGTTTTTCTTTCCTTTCTCTCCTGGACTTGAAAC
TATATCCTTTTTATCTTTCTCTTTTTTTTCATCACATCTTTCTTTCTTTT
CTGTATATTGTCCAATTTCTTTACTCTCTTCATTTTATATTCGCATCCTC
TCGTTCTTTTTATCATCTATCTTTTCTTATTTTGTTATTCTTGTCTCCTC
AATCTTCTTTCTTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f12.g1 MSMg01no161_f12.g1 CHROMAT_FILE:
MSMg01no161_f12.g1 PHD_FILE: MSMg01no161_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:51 2005
         (327 letters)



>mm_chr12_15533271_15533997
          Length = 727

 Score =  563 bits (291), Expect = e-165
 Identities = 318/327 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgattctatgaaattgccccataaagctgggagctatggatggtttctgggtagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgattctatgaaattgccccataaagctgggagctatggatggtttctgggtagagtg 260

                                                                       
Query: 61  gaggtgttatatatgccatagaattaacagcctcgtggtattttaagattgggcagagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtgttatatatgccatagaattaacagcctcgtggtattttaagattgggcagagac 320

                                                                       
Query: 121 tagtggtgaaggtaacaagtatattactgcaaattccatgtggtgattaatttttaaatt 180
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtggtgagggtatcaagtatattactgcaaattccatgtggtgattaatttttaaatt 380

                                                                       
Query: 181 aactaatagactcaattattctacaaataggatgagttactttattcaacaattttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaatagactcaattattctacaaataggatgagttactttattcaacaattttgttt 440

                                                                       
Query: 241 catatcaatgttatctatagatatgatggaaagaacatgcctgccgccatgagtgtatcc 300
           |||| ||||||||| || |||| |||||||||||||||||||||| ||||||| | ||||
Sbjct: 441 cataacaatgttatttacagatttgatggaaagaacatgcctgccaccatgagcgcatcc 500

                                      
Query: 301 ccctgaggatgagcaaagacagcagag 327
           |||||||||||||||||||||||||||
Sbjct: 501 ccctgaggatgagcaaagacagcagag 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)