BAC Information

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BAC

Clone NameMSMg01-161F24
Chromosome12 (Build37)
Map Location 77,928,149 - 77,928,525
singlet/doubletsinglet
Overlap genenone
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15
Downstream geneFntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F24.T7 (MSMg01no161_f24.b1)MSMg01-161F24.TJ (MSMg01no161_f24.g1)
ACCAG360795AG360796
length1,2121,193
length of high quality
(start - end)
430 (29 - 458)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no161_f24.b1 PHD_FILE: MSMg01no161_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:54 2005CHROMAT_FILE: MSMg01no161_f24.g1 PHD_FILE: MSMg01no161_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAACTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
AAAGCTAACCTAAGATACTTTTAAAACTCTAAAGACAATGATGAAAATAA
TAAAAAAAAGATTGTTCATTAAATGAATCTTGACTTGGGATTAGGGCATA
ATTTCCAATGATTTCTGAAATGACCCTAAACATACTTCTACCGTTATGTA
ATATGTATTTATATAATGTGGTATTCTCAGTACTGCTGATTATAAAATCA
AAATATTGATCAACTTTTGAAAACATCAAGGACACCTGCATCCTGCAGCA
TCAAACGCTCAGCAAACGTTCGGTGCTTGATATAAAACAAATGAACACAT
TCATCTCATCGGCATGCAAATCTGCTCCAGTCGTTAATGAATAATCAATT
ATATTGTACTAGAGAGTTATTTTGAAGTTGATTTATGACTTACTTTGATT
TTTTTTCTCCCCCCCCCCACTTGGTGTGTATGCTTGTATAAAAGGGATCA
TTTAAGACTTTTGGGGTGAAAAGAAGCCATAAACAGAAAAAGCCTAAGTA
ATTCTGACATAAATAGACTTTGGGGGTTTGAAAAAGAACTCTCTAGAAAC
AATGGCCACTTAAGATACCACAGAGACACCTTTTTTTCCTTTTAAGACCT
TTTTATATCTGGACTTTCTGGGCTTGTTGAATGGATGACCTCGGGGTACT
CAAGCCCTTCATTTAGTTATTTTTAGCACAAGGAAAATCATCTTTTTGCC
TCAGAAAACTGAAATCAGAGATAGACAACTTCATCAGCTCATGCGCAACC
GAAAGAAAGCATTTTCTAAATCTTGTCCAGTCTCCCTGCTTCCTTTCCTC
CGGGCACTTTATCTCTGCCTGTGGTTTGGTTCAGCTTTCTCTGCATCCCC
CATCTTCCTGCCTTGGGGGGAGGCAAAAAGAAAACCAATACCTTTTTTGG
CAAAAAAAGCGTTTACAAAAAATCTAACCTCTAAAATTCTCTGCCCCCGC
ATATTAGTTACCCCCCCCCAATAATCCCCCCCCCCAATTCTATAAAGTTT
CTTTTTGTTCCCCCCGACCCCCCCTCAATTCTCCTAAATATACCCTCTTC
CCTATTTTTTATATAAAAAAAAAAAATTTCTCTTTTATATCTTTCCTCAC
CACCCTTGTTGAAAACGGGCACATTCTCCCATTTTTTTCTTCATCTCAAA
ACAATCCACTTA
NNAATTCAGGAGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCGGAAGGGAGTGTGCAGCCTGGAACTGAA
TCTTGACCGTAAGTATTTAAGATGACATGTATTTCATGGTTGCTGGTTGC
AAGTCATGTCTCATAAAGGGAGAGTGCTCATTTCTGAGACATTCCCGCTA
CACAATCCTCCACATGCAGGCTGCCTGATGTTCTCATTTCCTGCTGTGAG
AGAACGAGAGGATTCCTAAAGCTCTGGCTGCACAGGGAACGATGTGCAGC
GAGGCTCTTCCTGGTTTGCTACTTGTATATGGGCTGACTGGTAGACAGAG
CCCCCCCAAGCCGGGGTGGGCATCTTAATTTAGGGCGCCAATTCCTATTT
TTTATTTCAACTAACAAAGTAGCCTTCTTCGAAAGAAATGGAAGTAATTT
TTTTTTTTCCCCCCCCCGGNAANAAGAACTCTCAAAAAAAAAAAAGAGGG
GGCCNNACAAAAGGAAGAACTCCTTACTATATACCACGCAAGGAATTGAA
TCTTCTAGAAGGAATGATTTTCTGGAATCTAACAATACCTTGAAAGGTTT
GAGAACACCAGTGTGACCGGTTTTGATGTGATTTGACGCGGACGTTCTAT
GTGTACACTTCCGCAGTTTATGCCATCTCTAGTTTATCTTGGCATCTTGA
TAAGAAGGAGCCCAGGTTTACTTTACCCTTGAGAGGCACAGGTCCTGCCC
AGCTAAGCCTGTGTTACCAGACTTGCAAATATAATCTGCACTTAAATAAA
GCCCTCTGGGGCTTGTGTTTAACTCAGAGGTTGGCTACTAGTTAGCTCTA
CTCCCCAACACTGCCAAGCAAGATGAAAAACCCATTTGTTGGTGCTTGGT
TTTTAACCTTGTTTATGGTTTCTTTTGTTCTGAATTCCAAAAGAATAGGC
CTTTTTAAAAGGGGAAATATTTCTTGCCCCATGGGGGAACACCATTTTTT
ACTCTTGTCCCCCAAGGTAAAGAAAGGAAACCCCCTTCTAATTTTTAAGT
CGCGTCTTTTTTTTTATTAAGGTTTCTTTCTCCTCCAAGTTACTTAAATA
CCTTCTTTCAAAAAAAAAAACAAAAATAGGGCCAACTCCCTTCTTTCTTA
TTACACTCCTCTGTGTCTTTTCTCCATATATTTACTCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f24.g1 MSMg01no161_f24.g1 CHROMAT_FILE:
MSMg01no161_f24.g1 PHD_FILE: MSMg01no161_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:55 2005
         (377 letters)



>mm_chr12_77927949_77928725
          Length = 777

 Score =  648 bits (335), Expect = 0.0
 Identities = 366/383 (95%), Gaps = 12/383 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcggaagggagtgtgcagcctggaactgaatcttgaccgtaagtatttaagatgacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcggaagggagtgtgcagcctggaactgaatcttgaccgtaagtatttaagatgacatgt 518

                                                                       
Query: 61  atttcatggttgctggttgcaagtcatgtctcataaagggagagtgctcatttctgagac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 517 atttcatggttgctggttgcaagtcatgtctcataaagggagagcgctcatttctgagac 458

                                                                       
Query: 121 attcccgctacacaatcctccacatgcaggctgcctgatgttctcatttcctgctgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attcccgctacacaatcctccacatgcaggctgcctgatgttctcatttcctgctgtgag 398

                                                                       
Query: 181 agaacgagaggattcctaaagctctggctgcacagggaacgatgtgcagcgaggctcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 agaacgagaggattcctaaagctctggctgcacagggaacgatgtgcagtgaggctcttc 338

                                                                       
Query: 241 ctggtttgctacttgtatatgggctgactggtagacagagcccccccaagccggggtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 337 ctggtttgctacttgtatatgggctgactggtagacagagcccccccaagctggagtggg 278

                                                                       
Query: 301 catcttaatttagggcgccaattcctatttttta------tttcaactaacaaagtagcc 354
           |||||||||||||||| ||||||||||      |      ||||||||||||||||||||
Sbjct: 277 catcttaatttagggctccaattccta------aacccaatttcaactaacaaagtagcc 224

                                  
Query: 355 ttcttcgaaagaaatggaagtaa 377
           |||||||||||||||||||||||
Sbjct: 223 ttcttcgaaagaaatggaagtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)