BAC Information

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BAC

Clone NameMSMg01-161J19
Chromosome12 (Build37)
Map Location 15,370,995 - 15,371,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161J19.T7 (MSMg01no161_j19.b1)MSMg01-161J19.TJ (MSMg01no161_j19.g1)
ACCAG360972AG360973
length1,2331,315
length of high quality
(start - end)
420 (26 - 445)64 (129 - 192)
definitionCHROMAT_FILE: MSMg01no161_j19.b1 PHD_FILE: MSMg01no161_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:25 2005CHROMAT_FILE: MSMg01no161_j19.g1 PHD_FILE: MSMg01no161_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTCTATGGCCTATACATCCTAAGGGAGAGGATCCGCGGAATTCAAAA
TGATTTGTAGGGCTCTGCACTGAGCAGGGACAGGGGAATATCAAGATGTC
AGTTTGCAAAGTGCTGTAAGGTCCCTGTTTCCTGTCTGAGCCAATGCTTG
CCTTCAAATAGAGATGGAAATGTCTTCAGCTTAGCAGGAGTTCAACAAGG
ATAACTTGTTTCTTTATATGACAAGGCTGATGTGTCTTGGGAACATGAAA
GTCCAAGCACCATCTAAAATAGAAATGTAGTTCTGGGGCAATGGGTCACC
ATGGTTCTAGATACTCATTATGCTTTTCTCTAATATGCCAAGAGTGATGT
CAGTTATTTAAGTTGTGTTTCTCACTCTCTAATATACTAACTACTTTTTC
TATATAAGAATCTGTAGCCTCAGTGTGAATTATGCAGAAAAACATTTTTT
TTTTCCCCCCCCCCGATTTTGATCACACATCTGAAAAAAAAAAGGAGATC
ACTATGCTCACTGTGTTATAGTCTTCCAAAGGGGTTGAACTTACCCGTCA
CAGACATGAGGTTTTATATTTACCTCTTGATATTAGAAAAAAGATCAGAG
AGACAATATTTTGCAATGTATCAAAATAAAGTACTCTTAAAATCTGAGAT
TGTAGTGTATTGCATAGGGCTATATCTCAGATATTTTCACTGAACAGATA
CCAACATAAGTATGAAGGAAATTGTCAGCACTACATTTTTCACTAGCTGG
ACAAAATACAAATCATCGAAATAATTATCATGCGTGCTTCAGGAACATGG
GAGACATTTGGTCACAGACTGAATAGATAATAGAAAATTATTCATTAATA
AATCTTGAGTATTGTTTATCACAGTTGAGTTGAGAGGTTCAAGATGACAC
CCAATGGCTTGGTAGCCCATTTTGTCTGGTTGTTTTGGTTCCTGGCTTGT
TTCAATATTAAAATAATTTTTTTTTATTAACTACCAATCTCCTTTCTTTT
AATATTAAAAAAAAATTCCCTTTTTAAAAATTTTATATAATTTCTTACAC
ACCATGTTTTTTATATGTAAAAAAATTTTTCTTTGNTTCTAAATCTCTAT
TTATTTTTCTTTTTTTTCATATTATTTCTTANACTTTCTCCCGTATATTA
TCTTTATTCTCTCTTTTAATTAATTTCTCCTTATTCTATATTTTAATTAT
ATATTCCTTGCACTTTTTATCTCCACTATATAT
NNTTATTAAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTCAAGAAATGGCAGATTCTAAGAATGGGTCA
GAACATACACAGCCTAGAATATCTCGCATTAGCAAGTAAGGAAGGACAGG
AGGGGAAATGGAATGGAGAGAAGATGGAGGAGGAGGAGAAATTTTTTTTT
TTTTTTTTTTTTTTTTTATTTTTATTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTATTTTTTTTTTTTTTTTTTCTTTTTTTTATTTTATTTNTATT
TTATTTTTTTTTTTTTTAAAATTNTAATATTTCTTTTTTTTTTTTTTTTT
TTACTTTTTTTCTTTATCCACAAACATTTTTTTTTTCAAAAAAACCCCCC
CCACCAAAAAACAAAAAAAAAAAAAACTTTTTTTCTTTTCACCCCCCCCA
AAAAANNNNNNCTCTTCAAAAAAAAAAGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCNCNNNNNNNNNNNNNCNNCNNCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCNCCCCCCNNNCCCNNCCCCCCGCCCGCGGCNCNNCGGCGCCNCGC
CCCCCGCGNCGCGCGCCCGCCGCCCGCGCGCCGCCCCCGNCGCGGCCCCC
GCGCGCGGCCCGGCGGGCCCCCGGCCCCGGCCGCCGCCCCGGCGCGCCCC
GCGCGCGCCCCGCCCGCCCCGGCCCCCCGCGGCGCGCGGGCCGCGCCGCC
CGCCCCGCGGCCGCGCCCGCCGCCCCGCCCCGCCCNGCCCGCCNCCCGGG
CGGCCCCGCGGCCCCCGCGGCCGCCCGCCGGCGCGCGCCCCCCCGCCCCC
GCGCCGGCCCCCCCGGCCGCGCGCCCGGGCGCCCGGCCCCGCGCGCCGGC
GCCCGCGCGCCGCCCCGCGCGCCCCGCCGCGCGCCGGGCCCCGCCGGCGC
CGCCCGCCCCGCCCGCCGCGCCCGGGCGCGCCCCGCGCGNNCCCGCCCCC
CCGCCGCNGCGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_j19.b1 MSMg01no161_j19.b1 CHROMAT_FILE:
MSMg01no161_j19.b1 PHD_FILE: MSMg01no161_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:25 2005
         (420 letters)



>mm_chr12_15370780_15371599
          Length = 820

 Score =  712 bits (368), Expect = 0.0
 Identities = 395/404 (97%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcaaaatgatttgtagggctctgcactgagcagggacaggggaatatcaagatgtc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaaaatgatttgtagggctctgcactgagcagggacaggggaatatcaagatgtc 275

                                                                       
Query: 76  agtttgcaaagtgctgtaaggtccctgtttcctgtctgagccaatgcttgccttcaaata 135
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 276 agtttgcaaagtgctgtaaggttcctgtttcctgtctgagccaatgcttgccttcagata 335

                                                                       
Query: 136 gagatggaaatgtcttcagcttagcaggagttcaacaaggataacttgtttctttatatg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagatggaaatgtcttcagcttagcaggagttcaacaaggataacttgtttctttatatg 395

                                                                       
Query: 196 acaaggctgatgtgtcttgggaacatgaaagtccaagcaccatctaaaatagaaatgtag 255
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 396 acaaggctgatgtgtcttgggaacatgaaagtccaagcaccatctaaaagagaaatgtag 455

                                                                       
Query: 256 ttctggggcaatgggtcaccatggttctagatactcattatgcttttctctaatatgcca 315
           ||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 456 ttcaggagcagtgggtcaccatggttctagacactcattatgcttttctctaatatgcca 515

                                                                       
Query: 316 agagtgatgtcagttatttaagttgtgtttctcactctctaatatactaactactttttc 375
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 516 agagtgatgtcagttatttaagttgtgtttctcactctctaatatactaactacattttc 575

                                                       
Query: 376 tatataagaatctgtagcctcagtgtgaattatgcagaaaaaca 419
           |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 576 tatataggaatctgtagcctcagtgtgaattatgcagaaaaaca 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)