BAC Information

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BAC

Clone NameMSMg01-162L10
Chromosome12 (Build37)
Map Location 50,586,347 - 50,586,609
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
Downstream geneLOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L10.T7 (MSMg01no162_l10.b1)MSMg01-162L10.TJ (MSMg01no162_l10.g1)
ACCAG361752AG361753
length713741
length of high quality
(start - end)
321 (48 - 368)260 (76 - 335)
definitionCHROMAT_FILE: MSMg01no162_l10.b1 PHD_FILE: MSMg01no162_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:09 2005CHROMAT_FILE: MSMg01no162_l10.g1 PHD_FILE: MSMg01no162_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAAAGCAAATCAAAACAATCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGATGAGGATGTGGAGAAAGAGGAACACTCCTCTATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTAGTTCCT
CAGAAAATTTGACAAAGTACTACTGGAGGATCCCTTAATACCTCTCCTGT
GTATATATCCAGAATATGTTTTATTCGGTAACCACCACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAACACCTAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAAAATGTGTTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGCATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAACCAATCACAAA
GGAACTCACACAACATGTACTCACTAATAAGTGGATATTAGCCCATAAAC
CAGGATACCCAAGATATAAGATACAATTTTCTAAATGCATGAAACTCAAG
AAGAACGAAGACC
ATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGAAGTTTTATAACTAAAAGCTA
AATGAGAAAAATAATAAAAAATAACCACTGCTTGAACTGTAAGGGTGTCT
GGTGCATCACCCCGAGTACATCCTACTGTCTATATTCTTCACTTACTTTT
ACTTCTTCTGTTCTTTTTCAATTTTTCTTCCTTCTTACTTTCTTTTTTTC
TTTGTCTTTCTTTTTTCTTTTCTGTTTTTTTCTTTTCTTTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCTACCGCANTATCCA
TTAATACCTCTCTCTGTTTTTTTTTCCCCCCCCCCCCCCCCCCAGTTAAT
AAGGACACATGTTCTACTATGTTCACCCCACTATTATATATAAAATCCTC
GACGCTGGAGCGATCCCTCATGCCCCTCAAAAGACATATGCACACCCAAT
ATTTGGCCAACCTACTCTATGCAATACTATCCACCTATTAAAAATAATTA
ATTCACGAAATTCCAAATCATATTGCACCCACCCTGTCCATCCTCCCTTT
TTAATGACGTCATTACATTTTTTTTTATGTATCTTTTCCAAAAATCGCAT
TCTACTGACCCATTGGATCTTTTTTCCCTCCCCTCCCATTATTTCCTTAC
CTATGCGCAATAATAAAAATTGTCTAAAAAAAACTAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l10.g1 MSMg01no162_l10.g1 CHROMAT_FILE:
MSMg01no162_l10.g1 PHD_FILE: MSMg01no162_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:09 2005
         (260 letters)



>mm_chr12_50586147_50586807
          Length = 661

 Score =  462 bits (239), Expect = e-135
 Identities = 257/263 (97%), Gaps = 3/263 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaagttttataactaaaagctaaatgagaaaaa-taataaaaaataaccactgcttg 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 actgaagttttataactaaaagctaaatgagaaaaaataataaaaaataaccactgcttg 260

                                                                       
Query: 60  aactgtaagggtgtctggtgcatcaccccgagtacatcctactgtctatattcttcactt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgtaagggtgtctggtgcatcaccccgagtacatcctactgtctatattcttcactt 320

                                                                       
Query: 120 acttttacttcttctgttctttttcaatttttcttccttcttactttctttttttctttg 179
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttttacttcttctgctctttttcaatttttcttccttcttactttctttttttctttg 380

                                                                       
Query: 180 tctttcttttttctttt-ctgttttttt-cttttctttgtgtgtgtgtgtgtgtgtgtgt 237
           | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tttttcttttttctttttctgttttttttcttttctttgtgtgtgtgtgtgtgtgtgtgt 440

                                  
Query: 238 gtgtgtgtgtgtgtgtgtatgtg 260
           |||||||||||||||||| ||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgtg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 661
Length adjustment: 9
Effective length of query: 251
Effective length of database: 652
Effective search space:   163652
Effective search space used:   163652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)