BAC Information

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BAC

Clone NameMSMg01-163N09
Chromosome12 (Build37)
Map Location 27,852,907 - 27,853,187
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163N09.T7 (MSMg01no163_n09.b1)MSMg01-163N09.TJ (MSMg01no163_n09.g1)
ACCAG362517AG362518
length738737
length of high quality
(start - end)
313 (49 - 361)281 (79 - 359)
definitionCHROMAT_FILE: MSMg01no163_n09.b1 PHD_FILE: MSMg01no163_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:31 2005CHROMAT_FILE: MSMg01no163_n09.g1 PHD_FILE: MSMg01no163_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAACAGAGAACTTCTAAATCTGATAAACAACTTCAGTGCAGT
AGCTGGATATAAAATTAACACAAACAAATCAGTGGCCTTTCTTTACACAA
GATAACCAGGCTGAGAAAGAAATTAGGGAAACAACACCATTCAAAATAGT
CACAAATAATATAAAATACCTTGGGGCGATTCTAACTAAGGAAGTGTAAG
ATCTGTATGGTAAGAACTTCAAGTCTTTGAAGAAAGAAATCATAGAAGAT
CGCAGAAGATGGAAAGATCTTCCATGTTCATGGATTGGCAGGATTAATAT
AGTAAAAATGGTTATCTTGCCCACCGCCCCTGCAGATTCAATGCAATCCC
CATCAAAATTCCAACTAAATTCTTCATAGAGTTAGAAAGGGTAATTTGCA
AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTATTCTGAAC
AATAAAAGAACCTCTGGTGAAATCACCATGCCTGACCTCAAGCTGTACTA
CAGAGCAATTATGATAAAAACTGCATGGTACTGGTACAGGAACAGACAGG
TAAATGAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTAT
GGTCACTTCATCTTTAAGAAAGGAGCTAANATTATCCAGTGGAAAGAAGA
CAGCACTTCAACAAATGGTTCTGGGTCAACTGGCAGTT
AACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCTGTCTCTCTCAAGATC
ACCTTCCTTCACTTGCTCCTTGATTAGGTAATGACAGAGAGCCCCAGTCC
TTGGGACCACAGGGTCTAGATTCTCAGGGTCTTTTCTGTAACCCATTCTT
AGCTGAGTTATTGGAAAAGAGGGATAAAAGTCACACTGAGAGCTTGGAAT
GGCTGGTTCTTAGAAAGCACTCTGGGGGCTAACCTTGTGTTGTCAAGGAC
AACCTCTCAGTATCACACAAGCCATTTGCATCAACCTCAGTATCACACAA
GCCATTTGCTTTTTTTTCACCCACCCCCACCCGCCATTTGCATCAACCTC
AGTATCACACAAGCCATTTGCACCAACCTCAGTATCACTCAAGCCATTTG
CATCTGCGGAAGTTACCAGGCATGGTCAATGCTTCCTTGACTTTTTGTGC
CCTGTGCTATTGAATTCACCTAGAACCTGGAGAAAGAAATGAAAGACAGG
GTCGAGAGCCTGAGAGCTGCTGTACAGTAACACTCTGGCTTACTCTCCTG
CTGGCTGCGTCTGCCTGTGCGCGCTTGTAGTTTATGACGCTTTGGAGTTT
ACAACACTCAGTTTTCGAGCTGTTTCATTTCCTTTGTCTGGGGAATTATT
TTGCCTCCTGAAGAGAATTGGCGGTGGATAAATAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_n09.g1 MSMg01no163_n09.g1 CHROMAT_FILE:
MSMg01no163_n09.g1 PHD_FILE: MSMg01no163_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:31 2005
         (281 letters)



>mm_chr12_27852707_27853387
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctctgtctctctcaagatcaccttccttcacttgctccttgattaggtaatgacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcctctgtctctctcaagatcaccttccttcacttgctccttgattaggtaatgacaga 422

                                                                       
Query: 61  gagccccagtccttgggaccacagggtctagattctcagggtcttttctgtaacccattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagccccagtccttgggaccacagggtctagattctcagggtcttttctgtaacccattc 362

                                                                       
Query: 121 ttagctgagttattggaaaagagggataaaagtcacactgagagcttggaatggctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttagctgagttattggaaaagagggataaaagtcacactgagagcttggaatggctggtt 302

                                                                       
Query: 181 cttagaaagcactctgggggctaaccttgtgttgtcaaggacaacctctcagtatcacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttagaaagcactctgggggctaaccttgtgttgtcaaggacaacctctcagtatcacac 242

                                                    
Query: 241 aagccatttgcatcaacctcagtatcacacaagccatttgc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagccatttgcatcaacctcagtatcacacaagccatttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 7
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)