BAC Information

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BAC

Clone NameMSMg01-164P09
Chromosome12 (Build37)
Map Location 105,363,299 - 105,363,582
singlet/doubletsinglet
Overlap genenone
Upstream gene9030205A07Rik, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a
Downstream geneSerpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P09.T7 (MSMg01no164_p09.b1)MSMg01-164P09.TJ (MSMg01no164_p09.g1)
ACCAG363263AG363264
length726735
length of high quality
(start - end)
317 (50 - 366)284 (80 - 363)
definitionCHROMAT_FILE: MSMg01no164_p09.b1 PHD_FILE: MSMg01no164_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005CHROMAT_FILE: MSMg01no164_p09.g1 PHD_FILE: MSMg01no164_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCCTGTTCTGAATATCACATGTCTATGGGTTACGTGACACA
GGCCCTACTGGGTCTGACTTCTTTCCCTGTGAGCATATTGACAGGCTCAC
ACACAAGGAAACAGGAAATGTCACCTCCATCATTTGTCTAATGTAGTAAT
AACTTATGGCCTGAGCAAGCTCTGCTCTTCCATGCATCTGTTGGGACTTG
AGTCACATGCCCTTTGCCAACTATGAGAAGCATGGTGGATGGTGGTAGCA
ATGCCTGTCATGTCCTTGCTTCCTGTTCCTCTGAGTACCTGTCTACAGTG
TGATTGCTGTATCTTTCTCTCCAAACCACCCCGCCCATTCTCCATTCCTA
CAACTGCACAAGAAGGCCTGCAACCCTAACCCTGCAACCATATATCATGG
GGAGAAACAAGTTCTTATCTTATGTCTGCATTTTGCATCATTTTCTGAGA
TGTAGCTGGAGGGGTTGGGATAGTGTGAGAGCAGAAGTGGCATCCAGGAT
GCTGATGGTCATTATAACTATTGCCGGCACTATTAATCCCTATTCCATAG
TCCTGCATGCTAATCTTTCCTGTGTAGACCTGAGACCTTGTCAGTGATCT
CTGTCAGGTAGTTGAGTTAAAACCTCAAGGTGATATGTCAGAGTTTCATT
AGATCCAGTGTGAAGGACTGTGTTTT
CCTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGAACGAGCAACTGAGCT
GTGCAAATCGCACAGAACTGGGCTCTCAGCAGCTGACAGCAAGAGCCAAG
GTCCTGAGGCAGAATACAGTTGGTAAGTTAGAGCAATGGGAAGGAGGTAA
CAGATGATTCCAGAAGGTTGAAAATAAGCAGATCATGCAATACAGAGAGC
ATAAGATTCTGCCTGCACACGACAGGGTTACGAGATGTCTCAGTGAGAGT
GGAGGAGTCACATGGATCTTTCCAAAGGAGTGTAAAGGCTCAGTGATTGG
TGCCAAAGACAACTTGNCTGGNTTCCAAAAAAATNCCATGCTCTGATACA
GACTTGTTTGGGATGATTCNCAACCAACGAAAAATAAAGACTCCACCTCA
GCCCATGGAGGGGCTGTGTCCTGGATATCAAAGCTGAAAGAAGAGGAAGC
CTGTGTTATGCCCAGTTCACGGGAACCCCAGGAGACCACCAGAAATTGTG
ATACTGATGTAATAATTAAAGAGATTTTTTTATTATAGAAGTCTGGACCA
GGATCAAAATCATTCCTGCTGCACAGATTAGAAAAGTGACGCTCGAGTCT
AGGTCTTTGAGTGATATATATGTATATACACACATATATACATATATGTA
TATATGCACATATATACCTATATATGTATACATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p09.g1 MSMg01no164_p09.g1 CHROMAT_FILE:
MSMg01no164_p09.g1 PHD_FILE: MSMg01no164_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:57 2005
         (284 letters)



>mm_chr12_105363099_105363782
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaacgagcaactgagctgtgcaaatcgcacagaactgggctctcagcagctgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggaacgagcaactgagctgtgcaaatcgcacagaactgggctctcagcagctgacag 260

                                                                       
Query: 61  caagagccaaggtcctgaggcagaatacagttggtaagttagagcaatgggaaggaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagccaaggtcctgaggcagaatacagttggtaagttagagcaatgggaaggaggta 320

                                                                       
Query: 121 acagatgattccagaaggttgaaaataagcagatcatgcaatacagagagcataagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagatgattccagaaggttgaaaataagcagatcatgcaatacagagagcataagattc 380

                                                                       
Query: 181 tgcctgcacacgacagggttacgagatgtctcagtgagagtggaggagtcacatggatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctgcacacgacagggttacgagatgtctcagtgagagtggaggagtcacatggatct 440

                                                       
Query: 241 ttccaaaggagtgtaaaggctcagtgattggtgccaaagacaac 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccaaaggagtgtaaaggctcagtgattggtgccaaagacaac 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)