BAC Information

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BAC

Clone NameMSMg01-165C06
Chromosome12 (Build37)
Map Location 76,488,957 - 76,489,645
singlet/doubletsinglet
Overlap geneRhoj
Upstream geneKcnh5
Downstream geneGphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165C06.T7 (MSMg01no165_c06.b1)MSMg01-165C06.TJ (MSMg01no165_c06.g1)
ACCAG363388AG363389
length7311,146
length of high quality
(start - end)		692 (40 - 731)34 (179 - 212)
definitionCHROMAT_FILE: MSMg01no165_c06.b1 PHD_FILE: MSMg01no165_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:11 2005CHROMAT_FILE: MSMg01no165_c06.g1 PHD_FILE: MSMg01no165_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCG
TCTCCACCCTTCACGCTCTTGAGCAACATCCTGAGCTCCCGCTGTGTCCA
GCTTTCCGAGACTAGCTGGACTTAGAATATGGAAACCAGAGCTGGTGCCG
ACAGCCTGGGATAAATGGCAGGAAGCTCACAAACCGAAGGAAGCAGAATT
CTACTCCCAGCCTCTTGGAGCGTGAAGCACCGGGCAGAACTCCGCGCTGC
TTTCCTTACAACACAGACAGCAGGTCCTGGGCGCTTACCAGACATGCGCA
TTCTAGGCTTCGCACCAGACTCGTAGTTGAGGATGAGTTCCCAGGGATCC
GAACTCAAGGGGAGCTAATGGCTTCATGGCTCCAGCACTGTCCCTTTGTG
ATGAACCTGCTCAAGAACATCTTTCGGGCCCTGGGAATTGACCAGTCTGT
CCCACCTCTGTGCAAAGGGAAAACAGATACTCAAAACCTACATGGCCCCT
AATCCCTACCTACCCTACCTTAGCCCAAGTCCTCTTGTGTCCATCATGGC
CCTCCAAAGCACTATCTAGTGGCTTTTATGAGTTAACACACCATCTCTTC
AGAAAACACCCAGGCACCGGTTACTCAGAGACGCAGTAGAAGGGTCCTCA
GTGCCAAAAGGACCACTTAGCCCTTCCTCGCGGCTGATCGCACCATCTTC
ACACGTAACATAATCTTCACTCCAAGTGTAC

NTAATTCTNNNNAAAGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGAGGGTACTCCAATGTGGGAT
GTAGNTCTATTTTTGAAAGTATTGGCCTTCCTTAATTCTAGGTAGTATTT
ATTGAATTACTTAATGCCCTGCTTTTACTTTAAAAGAAAAAAATGGTGGT
GTTGAGTGTCAACTCCCAGGTCTTATGAGTGCTAGGTGAACATTCCCGCA
CTGACCTATATTCCCANCCTTTAGTTAGCTTGTTTGAGACAGGACCTTTG
TGTGTGGTGCAGGCTGGCCAAGAGCTTTCTCTGTAACCGAAGCCAGTCTC
AGTTTATGTTCTCCATGCTATAACTTCTTCTCAAGTGCCAAGATTATGTG
CATATGACACCGTATCTAGTTTATATGGTTATTTTTTGATGATTATTATG
ATGGTTGTTTTCTGCCAACCGTAACAAGTGTAATGTGTACAAATTAAACG
TGACACAGTGATTTCTCCAACTGCCGCGGGACCTAGGATATGATGGCTTC
ATTTGAGTATACTCTTATTATTTTCTGTAAAAAAAAAATACAATTATTAT
TTTTATATTTTGTGTTTATGACTTGATGAGTCTTGGTTTCTAGCTTTGTT
GTTCCTAGTGTGTGATTAAATCCCTGGATACCTGCGATTGAGGATATATA
AGTTTCACAATTAATGTACCCTTACTATAAATTATATTACAGAGTCCTTT
ATTTCCATTGAGATCTTTCCCTGAGTCCCTCATATTATTTCCTGCCCCCT
GCCAAGTTTTCCTCCGCTCTCCCCTTAAATCCTGCCCCCGCGCCAACCAA
GGGCTCCCCCCTCCTCCTTTTGCTCTTCCCAAACCGGGTCTTCTCTGCGC
CACCCCCGCCCTGTCCCGCAACCTCTCTCCGTTAAACCCCCGTTGCCCCC
CCCACCCCCTAAAATCCCCCCTCGCCCTCCGCCCCCCCCAAGTGTCTGAA
AATTCAAAGGCGGCGGCCCCCCCCCCTTCCCCCGGCTGACCCCACACCCC
GCTCCCTTTCTCTCCAACAAACACCTCCTCTCTCACTCTCCNTTCCCAAC
AACACCCCCACCCCTCCTCCACAACAACTCTTCCTCTCCACACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_c06.b1 MSMg01no165_c06.b1 CHROMAT_FILE:
MSMg01no165_c06.b1 PHD_FILE: MSMg01no165_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:11 2005
         (692 letters)



>mm_chr12_76488753_76489845
          Length = 1093

 Score = 1247 bits (645), Expect = 0.0
 Identities = 678/689 (98%), Gaps = 1/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtctccacccttcacgctcttgagcaacatcctgagctcccgctgtgtccagct 64
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 205 gaattcgtctccacccttcacgctcttgagcaacatcctgagctcccgccctgtccagct 264

                                                                       
Query: 65  ttccgagactagctggacttagaatatggaaaccagagctggtgccgacagcctgggata 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 ttccgagactagctggacttagaatatggaaaccagagctggtgccgacaacctgggata 324

                                                                       
Query: 125 aatggcaggaagctcacaaaccgaaggaagcagaattctactcccagcctcttggagcgt 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatggcaggaagctcacaaaccaaaggaagcagaattctactcccagcctcttggagcgt 384

                                                                       
Query: 185 gaagcaccgggcagaactccgcgctgctttccttacaacacagacagcaggtcctgggcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagcaccgggcagaactccgcgctgctttccttacaacacagacagcaggtcctgggcg 444

                                                                       
Query: 245 cttaccagacatgcgcattctaggcttcgcaccagactcgtagttgaggatgagttccca 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 cttaccagacatgcgcattctaggcttcgcaccagactcgtagctgaggatgagttccca 504

                                                                       
Query: 305 gggatccgaactcaaggggagctaatggcttcatggctccagcactgtccctttgtgatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggatccgaactcaaggggagctaatggcttcatggctccagcactgtccctttgtgatg 564

                                                                       
Query: 365 aacctgctcaagaacatctttcgggccctgggaattgaccagtctgtcccacctctgtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacctgctcaagaacatctttcgggccctgggaattgaccagtctgtcccacctctgtgc 624

                                                                       
Query: 425 aaagggaaaacagatactcaaaa-cctacatggcccctaatccctacctaccctacctta 483
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 625 aaagggaaaacagatactcaaaaacctacatggcccctaattcctacctaccctacctta 684

                                                                       
Query: 484 gcccaagtcctcttgtgtccatcatggccctccaaagcactatctagtggcttttatgag 543
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 685 gcccaagtcctcttgtgtccatcctggccctccaaagcactatctagtggtttttatgag 744

                                                                       
Query: 544 ttaacacaccatctcttcagaaaacacccaggcaccggttactcagagacgcagtagaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 ttaacacaccatctcttcagaaaacacccaggcaccggttactcagagatgcagtagaag 804

                                                                       
Query: 604 ggtcctcagtgccaaaaggaccacttagcccttcctcgcggctgatcgcaccatcttcac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggtcctcagtgccaaaaggaccacttagcccttcctcgcggctgatcgcaccatcttcac 864

                                        
Query: 664 acgtaacataatcttcactccaagtgtac 692
           |||||||||||||| ||||||||||||||
Sbjct: 865 acgtaacataatctacactccaagtgtac 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space:   738606
Effective search space used:   738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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