BAC Information

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BAC

Clone NameMSMg01-165I05
Chromosome12 (Build37)
Map Location 29,282,442 - 29,282,691
singlet/doubletsinglet
Overlap geneColec11
Upstream geneLOC100043009, LOC669327, 1110015M06Rik, Allc
Downstream geneRps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, Myt1l, LOC100043496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165I05.T7 (MSMg01no165_i05.b1)MSMg01-165I05.TJ (MSMg01no165_i05.g1)
ACCAG363648
length727760
length of high quality
(start - end)
---250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no165_i05.b1 PHD_FILE: MSMg01no165_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:42 2005CHROMAT_FILE: MSMg01no165_i05.g1 PHD_FILE: MSMg01no165_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXX
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGAATACTTAGAAAAACAAAAACATG
GTTTATCTATGAAGTAGGTGTTATTCAGTGTTAAAATAAGGGAATTTTGG
CAACTGCTACACAATGGATTCGGAGAGCGTTGTACTAAGAGAAACAAAAT
GACCACAAAGGGCAAAGCCCATTGTACAATACGTAGGATGGGCAAATTCA
CAGAGACAAAAAGCAGACTCTGGGTTGTCAGAGCTGGGGAGGAGGGAAGG
AGTTACTGCTTAATGGTGCAGCATCTCCGTGGGGTGATAAAAGGCTTTTG
GAAGCAATGGGCACAGTTGCATCACATTGCGAATGTGTTGGTACCACTGA
ACTGTGCAGCTGGAGTTCCCCCCCCCCCCAGTTTTTATGAGACTGATCCT
TTACCTTGATTCTGTAAAAGTTTTGTAGTCTGCATGTTCCTCATTACTCT
TTGTTTACCAGGAACATTTCTCTCAACACTTTCGACTTGCTCAGATGATC
TTTTGATAGATATGCCTTTCCTACAGATCGCTAATTCTGTCTCCACTAGT
CTCAATTTCTTATTATCCTTGCCACCGTTCCGAACTCCCCTTCTTTACAC
TGCTTTTTTCCCTTTGTCTCTATTTTATCGTCCTCTTTCTTTTCTCCCGC
CCGCCTTCTCCGTTGCCTTGTCTCGCTCCGTTTCGTTTTCTCGTCTTGTT
CCTCACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_i05.g1 MSMg01no165_i05.g1 CHROMAT_FILE:
MSMg01no165_i05.g1 PHD_FILE: MSMg01no165_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:42 2005
         (250 letters)



>mm_chr12_29282242_29282891
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaatacttagaaaaacaaaaacatggtttatctatgaagtaggtgttattcagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaatacttagaaaaacaaaaacatggtttatctatgaagtaggtgttattcagtgtt 260

                                                                       
Query: 61  aaaataagggaattttggcaactgctacacaatggattcggagagcgttgtactaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaataagggaattttggcaactgctacacaatggattcggagagcgttgtactaagaga 320

                                                                       
Query: 121 aacaaaatgaccacaaagggcaaagcccattgtacaatacgtaggatgggcaaattcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaatgaccacaaagggcaaagcccattgtacaatacgtaggatgggcaaattcaca 380

                                                                       
Query: 181 gagacaaaaagcagactctgggttgtcagagctggggaggagggaaggagttactgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacaaaaagcagactctgggttgtcagagctggggaggagggaaggagttactgctta 440

                     
Query: 241 atggtgcagc 250
           ||||||||||
Sbjct: 441 atggtgcagc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)