BAC Information

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BAC

Clone NameMSMg01-166O05
Chromosome12 (Build37)
Map Location 25,515,372 - 25,515,615
singlet/doubletsinglet
Overlap geneLOC668719
Upstream geneLOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2
Downstream geneMboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166O05.T7 (MSMg01no166_o05.b1)MSMg01-166O05.TJ (MSMg01no166_o05.g1)
ACCAG364569AG364570
length739789
length of high quality
(start - end)
367 (49 - 415)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no166_o05.b1 PHD_FILE: MSMg01no166_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:31 2005CHROMAT_FILE: MSMg01no166_o05.g1 PHD_FILE: MSMg01no166_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATATATAGCCTAATGGAATATAGCAAGCCCTACAGCTCTCA
TATCTATTGCTCGCTGCCTCCATGACTACCAGCCCAGTACAAGCCAGCCT
GATGTATCTCACAGTTTCCTAACTAGTTTCCCTACTTCCACTCAGCCTCT
CTGGCCCTCTGTGACTATGATGCATCCACAGTAAGCTTCTACATGAGCTA
GGAGATACTGCAAGAGTGTGAGGATGGACAGAAAACGGGATAATAGTCCA
ACAGTACAAAGTTTTAGTCAGACCTGGGCAAAAGGTTCTGTAGTCTGTAT
CTTTGATTTATTAATAATATATCATATTTTTTAAGTAGCCAACGGGGTCG
ATTTTAAATGTCCTCACCCCCAAGAAATTATAAGGGTATGAGGTGATGAA
CAAGTTAATTAGCCTGAGTTGATCATTCCATAACGCATGCACACATGGAA
ACACTAGACCATAGCATATAAGTATATAAAATTAATATTTATCAATCAAA
ATTAGAAAAGAACCTTTAGGCATGCATGCATCAGAATCACCGGTAGGGCT
TAAAGCATCGATCCCTGGGCCCTCCCCTCGGAGCCTCGACTTATTAGGTG
TGTTCGCGCCTTTTTTTGCTCCTCCCCCTTTTATGTTTATATCCTCTTAC
ATTCTTTTTCCCTTGTTTTTTTTTTTTCCTTCTCTTTTG
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTTCCTTGCTAGATTGAGGGTGG
TTACAATACCTGCCTCACATGGTTGTTGTGGGGACTCACATAAGTCTACC
TTTAAAAGCAGTGTTAGCAGCACATTTAAACCCCCGCCCCCCTTTAAATA
TTAGTTTCCAAATCCTTGGATTTTGAGAGGACGATGCTGGCATTTTCCAG
GTGTTCCCATGGCTAGTTTAAAGGGTAAGAGATCACATTTGTAGGGCTGA
CACACTAACTGCCCTCCTGTATTGTAGGTGTGGACACTGCATAATTCACA
TCTGGCAGATAGGCTCGCACCCACTAACGTATGCTTACCTCCAGGCCTTT
CCTTTGATTAGGCCCCCCCTTCTCATGTTTTTTTGTTGTATACCTATTTT
CTTTTTCTAACTTTGCTCTTAATCACACTGTTATTATACACAGTTTCTTT
TTCAACTTTTCCCTCTTCTCATTTTGTCTTCTTTCACAAACATACTTTTC
TTTTAGCCTTTTTCTGCTTTTTATAATACTTATCATAACCTATATCTCTC
TCCTTTTTTTACCTTTTTCTTCTCCTCTTTTTTTATTATTACATCCCTCC
CTACCTCATCTCACCATCTGCGCCCCTCTCTCTTCTCATTATAATTGTCC
CACACATTATTTTACTTTTTCACCTTTTTCTTTAATCAGATATATAATCC
ATCTACCCTATTATCAAAATACACAATATATTCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_o05.g1 MSMg01no166_o05.g1 CHROMAT_FILE:
MSMg01no166_o05.g1 PHD_FILE: MSMg01no166_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:31 2005
         (247 letters)



>mm_chr12_25515172_25515818
          Length = 647

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttccttgctagattgagggtggttacaatacctgcctcacatggttgttgtggggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttccttgctagattgagggtggttacaatacctgcctcacatggttgttgtggggac 260

                                                                       
Query: 61  tcacataagtctacctttaaaagcagtgttagcagcacatttaaacccccgccccccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacataagtctacctttaaaagcagtgttagcagcacatttaaacccccgccccccttt 320

                                                                       
Query: 121 aaatattagtttccaaatccttggattttgagaggacgatgctggcattttccaggtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatattagtttccaaatccttggattttgagaggacgatgctggcattttccaggtgtt 380

                                                                       
Query: 181 cccatggctagtttaaagggtaagagatcacatttgtagggctgacacactaactgccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatggctagtttaaagggtaagagatcacatttgtagggctgacacactaactgccct 440

               
Query: 241 cctg 244
           ||||
Sbjct: 441 cctg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)