BAC Information

Click to search

BAC

Clone NameMSMg01-166P12
Chromosome12 (Build37)
Map Location 37,758,156 - 37,758,460
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P12.T7 (MSMg01no166_p12.b1)MSMg01-166P12.TJ (MSMg01no166_p12.g1)
ACCAG364624AG364625
length755828
length of high quality
(start - end)
308 (48 - 355)178 (78 - 255)
definitionCHROMAT_FILE: MSMg01no166_p12.b1 PHD_FILE: MSMg01no166_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:37 2005CHROMAT_FILE: MSMg01no166_p12.g1 PHD_FILE: MSMg01no166_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCTCAGTCCGTCATGTAACAACTGAAATGGTGCAGCATTGG
GCTCCTTAACATAGGAAGACTCTGAAGACTAAAACTTTTCTTCATTTGTA
TTTGACTATGCATGTTTGTATGTGTTTAGGTATGTGCACCATTGTGCACA
TGTGGGTATCAGTGGAATATTTGCAGGAGTCAGTGCTTTCCCTCCACCAC
GTAGGTCTGCAGGATCAAATTCAGGTCATCAGTCTTGGTGGCAAGATGCT
CTACATAATAAATATAATATGATATAATTTAATATGCTACCAGTTACTAG
GTGGCATATTTAAATTCAGACCCAGATTTGGGTTACTAAGTACATTACTA
TTAAACACATTATACACCCCCCCCCCTGTAGTGACCCAGGAATTTCCATT
ATGGAACTTACTTTACCTTGTATGACCAGCGTCTCTTCTCATTGCCCTAT
ATACCCTCTCATCTTTTTGGCCTCCCTCCCCTACTGCGTATTTCTCACCC
TTATATTGTCCCGCCTTTTTTATGCCCCTCATTCCCCCTCCCTTTCCGCC
TCTCCTCCTTTTCCACCCTTTTTCCCCTTTTTCCCCTTCCTCCCCTTTTT
TTTCCCCCCCCTCCCCCCTTCTTTTTCCCCCTTTCCCTTTTCCCAAATTA
CCACCCTACCCCCTTTCCCCCCCCTTCCTTTTTTTCTCCCCCTCTCATTT
CCACC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGAGATAGCCCCTCTG
GCTATCTATCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGG
ATGTATGCTTGTTATAGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTA
GGTGCAGAGTGTGCGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGC
TGCATTGTAGGCGGCACAATCTCCTCAGATTCGGTTTGCCGCTCTATATG
ACATTATGCTGTGTTATGCCTTGTTTTGTTATTCTAATCTTTGCCCTCAC
CACTGTTTGCTGTTGTCTTCCTCCCGTATGCCCATCTGACTGCTTCTAAG
TTCTTTGTTCGATACCCCCCCCCTCCCCATAATAACCAACCGTCTTTCCG
TACCATCTTCTCTTCTGCTTTTTTCACTTTCCCTCCCCGTCTCTCCCTTT
CCCTTCTCTGTTGCCTTCCCATTCAGTTACTACATTTCCCCTTTCTCCCT
TTCTCTTTCTTTTCATCTCGTTCTCTTCCCTTCTCCACCTCCCCTTTTCT
CCTTCCTTTCCCGCCTTTTTCTTTTCTCTATATGTTAATTGCTTCTTTTT
TCTTGCCCTCTCTTATTTTTCTCCCTCTGTTTCTCCCGCTCTCTGCGCCC
TTCCCTTCTTTACTTCTATTCTCTCTCTATCTTTCTGATCCTTGCTTTTT
TCCTTTCCCCCGTCCTTGTTCCTCTTCTCTCCGTCCTTTCTCTCACTCCG
CTCTTAACCCGCCTTGAGTCGCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p12.b1 MSMg01no166_p12.b1 CHROMAT_FILE:
MSMg01no166_p12.b1 PHD_FILE: MSMg01no166_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:37 2005
         (308 letters)



>mm_chr12_37758146_37758853
          Length = 708

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattctcagtccgtcatgtaacaactgaaatggtgcagcattgggctccttaac 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggaattcattctcagtcagtcatgtaacaactgaaatggtgcagcattgggctccttaac 256

                                                                       
Query: 64  ataggaagactctgaagactaaaacttttcttcatttgtatttgactatgcatgtttgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ataggaagactctgaagactaaaacttttcttcatttgtatttgactatgcatgtttgta 196

                                                                       
Query: 124 tgtgtttaggtatgtgcaccattgtgcacatgtgggtatcagtggaatatttgcaggagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgtgtttaggtatgtgcaccattgtgcacatgtgggtatcagtggaatatttgcaggagt 136

                                                                       
Query: 184 cagtgctttccctccaccacgtaggtctgcaggatcaaattcaggtcatcagtcttggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cagtgctttccctccaccacgtaggtctgcaggatcaaattcaggtcatcagtcttggtg 76

                                                                       
Query: 244 gcaagatgctctacataataaatataatatgatataatttaatatgctaccagttactag 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 75  gcaagatgctctacataataaatataatatgatagaatttaatatgctaccagttactag 16

                
Query: 304 gtggc 308
           |||||
Sbjct: 15  gtggc 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)