Query= MSMg01no168_e01.b1 MSMg01no168_e01.b1 CHROMAT_FILE:
MSMg01no168_e01.b1 PHD_FILE: MSMg01no168_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:20 2005
(306 letters)
>mm_chr12_78643843_78644548
Length = 706
Score = 507 bits (262), Expect = e-148
Identities = 290/306 (94%), Gaps = 11/306 (3%)
Strand = Plus / Plus
Query: 1 gggagttgggaataagatatatagagaaaccagatccctttgaactctgtactaagtcag 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 212 gggagttgggaataagatatatagagaagccagatccctttgaactctgtac-------- 263
Query: 61 taataggacaaactgtacttgccactctttttagttctaggtactcctttagtctaaacc 120
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 ---tagggcaaactgtacttgccactctttttagttctaggcactcctttagtctaaacc 320
Query: 121 agttgagtgggatcttctgccttttgcatccataagaattttgatgcccacttgttccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttgagtgggatcttctgccttttgcatccataagaattttgatgcccacttgttccag 380
Query: 181 agaccagttcaacttgctgacagtcaccctttgcttctctccattttcttcgatcctggt 240
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 agaccagttaaacttgctgacagtcaccctttgcttctctccactttcttcgatcctggt 440
Query: 241 tcatcattaccaatgccttttaattagtgttgatcccctggggcagtgactgtccccagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatcattaccaatgccttttaattagtgttgatcccctggggcagtgactgtccccagg 500
Query: 301 acactt 306
||||||
Sbjct: 501 acactt 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_e01.g1 MSMg01no168_e01.g1 CHROMAT_FILE:
MSMg01no168_e01.g1 PHD_FILE: MSMg01no168_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:20 2005
(385 letters)
>mm_chr12_78806972_78807756
Length = 785
Score = 654 bits (338), Expect = 0.0
Identities = 367/382 (96%), Gaps = 10/382 (2%)
Strand = Plus / Minus
Query: 1 caaggttggcaatcacaaggagttctcccacacaggaagaggtgtaggagaactcaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caaggttggcaatcacaaggagttctcccacacaggaagaggtgtaggagaactcaagta 503
Query: 61 ctatgtggcataaaacaggttcaggggacactctggggacactgtcttactacttgttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctatgtggcataaaacaggttcaggggacactctggggacactgtcttactacttgttgt 443
Query: 121 agtgatttctcagacaaagcatagatttctaaaggtagatggtgcctttagggttcagca 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 agtgatttctcagacaaagcatagatatctaaaggtagatggtgcctttagggttcagca 383
Query: 181 cagaagagagagagatggaatggcgaggaacatgactgggaaatcattctccccaggttt 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagaagagagagagatggaatggtgaggaacatgactgggaaatcattctccccaggttt 323
Query: 241 ggttcatttacaaattatctgcgatctcagccaaaatgcttaagtaaacccctttgttct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 ggttcatttacaaattatctgcgatctcagccaaaatgcttaagtaaacccctttgctct 263
Query: 301 cagatgtctcatcaataaattacaatttttc-----tctgccttgttcagagaccaaagc 355
|||||| |||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct: 262 cagatgcctcatcaatagattacaa-----cccacctctgccttgttcagagaccaaagc 208
Query: 356 tctttccattattttatatatt 377
||||||||||||||||||||||
Sbjct: 207 tctttccattattttatatatt 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
