BAC Information

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BAC

Clone NameMSMg01-169I17
Chromosome12 (Build37)
Map Location 96,353,143 - 96,353,328
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169I17.T7 (MSMg01no169_i17.b1)MSMg01-169I17.TJ (MSMg01no169_i17.g1)
ACCAG366383AG366384
length681695
length of high quality
(start - end)
306 (376 - 681)186 (107 - 292)
definitionCHROMAT_FILE: MSMg01no169_i17.b1 PHD_FILE: MSMg01no169_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:16 2005CHROMAT_FILE: MSMg01no169_i17.g1 PHD_FILE: MSMg01no169_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATACTGAATCCTGTTGGCTGTCATGAGACAAGTGAAATGAATAAA
ACCAGGATGTTCTCTATATTTTGAAACTAGAACGTTCCTGTACATGAAAA
AAAAAAAATCAGACAATTGTTTTAGTGAGGCTGCATGAAGTAGATCTTGA
AATACCAGACTTTCTTATAAGGGGGGACAAAATAGAGGAGGAAATACAGA
GACAAACTGTGGATCAGAGACTGAAGGAAGGCCATCCACAGACTACCCTG
GGGATCTATCCTATATTCAGTCACCAAACCCAGACACTCTTGTGAATGCC
TTTTTGNGTTTGCCCNTGACCCATCCCCACTTCTTGGCCCTGGCGTTCCC
CTGTACTGAGGCATATAAAGTTTACACAACCAATGGGCCTCTCTTTCCAC
TGATGGCCAGCTAGGCCATCTTCTGATACATACTCTTTAGTTGGTGGTTT
AGTCCATGGGAAATCTAAGGGATGTGTTTGGTTGCTATTGCTGTTCTTCC
TATGGGGTTGCAAACCCCTTCAGCACCTTCAGTCTTTTCTCTAGCTCCTC
CATTGGGGACCCAGTGCTCAGTCCAATGGTTGGCAGCTAGCATCTGAACT
ATTTGTCAGGCTAAAGAATGGTCAAGGCTGT
GAAAGAACTGCGNAACGCCGGGAACNANAGAAGGATGGCAGAAACAAATG
TGNCCTGNNCAGCCCTCAGNCCATCTGAAAAATTAAGTTCTTTTTGCCAA
GAAAACACTGGGAAGTCCCCTCCATAGAATAATCTCTTTCATATTTAAAT
TTGGATTTACATTTGAACTTACAAACTAAATTGAAAGTTCTTAATATTCT
TAATACCAGTCTTCTCTTGCTGTACTATTTATTTTAAGAGTCTAAGAGAA
AATATTTGAGCTGTTTTCTATTTATGACAAAAGCTTTGCTCTGTTTTTGT
TTATAAAAAAAGGAAATAAATATTTTTTTTAAATAATTTTTTTTTTATCC
CCAGGACGAACCGCGTGGTATTGCCTCAAAGAAATGAGAAGAAAGTTAAA
ACAGTAAAGAAAAAAATATATCACTGACTCCATTTGGTTTTAACTATCTA
CTTCTTGCAATAAAACTTAGAAGCCTAGTTCCTTCATCAACACACACTAG
GTACACAAAACCTTTTTCAATGGATCTATTATCCCTATAACGGTCAGAAA
AAAAATCTATACCCAGTTATTCCTACTCTCTTCTCTGAAGAGAAATATAG
GTTTCCCCATCAAATTACAGTCAAATATCCATTATTTCCACTTAACTGTA
TTCCCAATGCTTTTTGTGACGAAAAAAAAAAAAGTTTATCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_i17.g1 MSMg01no169_i17.g1 CHROMAT_FILE:
MSMg01no169_i17.g1 PHD_FILE: MSMg01no169_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:16 2005
         (186 letters)



>mm_chr12_96352943_96353528
          Length = 586

 Score =  329 bits (170), Expect = 7e-95
 Identities = 182/186 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggaagtcccctccatagaataatctctttcatatttaaatttggatttacatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggaagtcccctccatagaataatctctttcatatttaaatttggatttacatttga 260

                                                                       
Query: 61  acttacaaactaaattgaaagttcttaatattcttaataccagtcttctcttgctgtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 acttacaaactaaattgaaagttcttaatattcttaataccagtcttctcttgctgtaca 320

                                                                       
Query: 121 atttattttaagagtctaagagaaaatatttgagctgttttctatttatgacaaaagctt 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||
Sbjct: 321 atttattttaagagtctaagagaaaatatttgggctgttttctatttatgagtaaagctt 380

                 
Query: 181 tgctct 186
           ||||||
Sbjct: 381 tgctct 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)