BAC Information

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BAC

Clone NameMSMg01-170A07
Chromosome12 (Build37)
Map Location 69,734,883 - 69,853,957
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170A07.T7 (MSMg01no170_a07.b1)MSMg01-170A07.TJ (MSMg01no170_a07.g1)
ACCAG366719AG366720
length725699
length of high quality
(start - end)
277 (49 - 325)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no170_a07.b1 PHD_FILE: MSMg01no170_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:51 2005CHROMAT_FILE: MSMg01no170_a07.g1 PHD_FILE: MSMg01no170_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,734,883 - 69,735,155)(69,853,673 - 69,853,957)
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAAGAGCATTTTGGAGGGACCGCAGTGAGAGTGTACTCAAG
ACACTGCCCCAGTGAGGCAAAACACAGAACATGAAACATATGCTGATCCT
GGCATGGTCTCATGAACAGGGAAACTATTGTCAGGCAAATACTGAAAGAC
ATCCCCAGCTGAGTGTGGGGCTTAGGGGAGCAACAGCTGAGATCCAGCCA
ATGGAAAAGAACTCTACACAACCCAGCAGACCTCCCGTAGCTCCTCTGAG
CCTCAAGAACAGCATGTCCTGCGGGGCATGGTGGCACACACCTTTAATCC
CAGCACTTGGGAGACAGATTTTTTTTGCACCCCCCCCCCACCCTGGTCTA
CAAAGTGAGTTCCAGGACAGCCAGCCCTATACAGAGAAACCCTGTCTCGA
AAAACAAAAACAAAACACAAAAAGAACAGCATGTCCTATGTGGAAAGTTG
TATTGCGCAGAACACTGTTAAGGGATGCAGATACTGGCTCAGGTATTCCT
GAATAAAGTTTATAGGGCATATACACTGCTCTTAGCACGGACGACTTAAC
CATTAACCCGTATTGAATGCTTACCCTATCCCCTCTTCTCCTCTTCTGCC
TTGTCTGCCCACCCCCCCCACGATTTATTGTCACCCCCTGCCCCCATCTC
TCCCTCCAATATCCCCTGCTTCCCN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCCTGGTCACTGAATGTTTTTCT
AGGCCACAGTAATTATTTGTGCTACAATTAGGTTACAATAGATGTACCAC
AGAGATGTGGTATGTTGTAGATGCTGAACCCTTGAAAAGTTCTTTTTCTT
TTCTTAAATCAATGGATAGAGTTTTTTGTCATCAAGCTTTATGCCCACCC
CAAACAATTTTATTATTCTTCTAGTGCCAGAAAGAAGCTGCGAGAGACCA
TCTGGAAAGTCCCCTAGGACTACTAGTCTCCGGGGTTTATTTTCTGAGTT
AATAACACCATTTTTTTCTGTTCCCCCCCTCCCCCCGCTCCAGAGTCACT
CTTTGTCTCCTTTTGTTCAACTGGCAACTAACATATGTTGCTCCCTCCTG
AAATGAGTCATTGTTTTCTGCTTTTATATATTTTGTCGGAACTTCCCAAA
TAGCCTTTGAACAAGTCTCTCTGGGTCCAGCTTCTCCTAGCTCTGGCTTA
TTTTGAACATTGTTTCTAGGCTGGCTGTCTCATATACTGACTAATGCCTC
CAACTTCTGACTACCCATTGTCCAGCCCGCTCTTCTCTAGGTCTTTCCTA
CCGTGTATATCCTCCTCATTGTCTTTCGATTTTCTCCCTGTCTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_a07.b1 MSMg01no170_a07.b1 CHROMAT_FILE:
MSMg01no170_a07.b1 PHD_FILE: MSMg01no170_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:51 2005
         (277 letters)



>mm_chr12_69734679_69735355
          Length = 677

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaagagcattttggagggaccgcagtgagagtgtactcaagacactgccccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaagagcattttggagggaccgcagtgagagtgtactcaagacactgccccag 264

                                                                       
Query: 65  tgaggcaaaacacagaacatgaaacatatgctgatcctggcatggtctcatgaacaggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaggcaaaacacagaacatgaaacatatgctgatcctggcatggtctcatgaacaggga 324

                                                                       
Query: 125 aactattgtcaggcaaatactgaaagacatccccagctgagtgtggggcttaggggagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactattgtcaggcaaatactgaaagacatccccagctgagtgtggggcttaggggagca 384

                                                                       
Query: 185 acagctgagatccagccaatggaaaagaactctacacaacccagcagacctcccgtagct 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagctgagatccagcctatggaaaagaactctacacaacccagcagacctcccgtagct 444

                                            
Query: 245 cctctgagcctcaagaacagcatgtcctgcggg 277
           |||||||||||||||||||  ||||||||||||
Sbjct: 445 cctctgagcctcaagaacaatatgtcctgcggg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no170_a07.g1 MSMg01no170_a07.g1 CHROMAT_FILE:
MSMg01no170_a07.g1 PHD_FILE: MSMg01no170_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:52 2005
         (288 letters)



>mm_chr12_69853473_69854160
          Length = 688

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcctggtcactgaatgtttttctaggccacagtaattatttgtgctacaattaggtta 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 485 actccaggtcactgaatgtttttctaggccacagtaattatttgtgctataattaggtta 426

                                                                       
Query: 61  caatagatgtaccacagagatgtggtatgttgtagatgctgaacccttgaaaagttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caatagatgtaccacagagatgtggtatgttgtagatgctgaacccttgaaaagttcttt 366

                                                                       
Query: 121 ttcttttcttaaatcaatggatagagttttttgtcatcaagctttatgcccaccccaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcttttcttaaatcaatggatagagttttttgtcatcaagctttatgcccaccccaaac 306

                                                                       
Query: 181 aattttattattcttctagtgccagaaagaagctgcgagagaccatctggaaagtcccct 240
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 305 aattttattatccttctagtgccagaaagaagctgtgagagaccatctggaaagtcccct 246

                                                        
Query: 241 aggactactagtctccggggtttattttctgagttaataacacca 285
           |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 245 aggactacaagtctcccgggtttattttctgagttaataacacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)