BAC Information

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BAC

Clone NameMSMg01-170H01
Chromosome12 (Build37)
Map Location 53,147,293 - 53,147,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33
Downstream geneLOC100039627, Nubpl, Arhgap5, Akap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170H01.T7 (MSMg01no170_h01.b1)MSMg01-170H01.TJ (MSMg01no170_h01.g1)
ACCAG367004AG367005
length715723
length of high quality
(start - end)
322 (52 - 373)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no170_h01.b1 PHD_FILE: MSMg01no170_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:23 2005CHROMAT_FILE: MSMg01no170_h01.g1 PHD_FILE: MSMg01no170_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGATTTTGTCCTTTGGGATTTAACACAAATTTGTGTTC
TCTTAGAAGCATTTCCTGGGCACCCTCACTTCATCCTGGCCTAGATGTTC
CTTGTCTATGTTCCTTGAACATTGTGTACGTAATTGCACTGTGAAGCTCT
GAGGTGGTTTTCCTGTTTGCCTGCCTCACTGTGGTTTCAACATTTGCAAC
CTGATTCATTTATCTTCGATACTCTAGAGCATAACAAGATACCAGGCCTA
CTGGGCCTCAGTGAGTATTTGTTGCATAGATAAGGAACTCGAGTCTATGT
CAGGGTCTTCTTGTTTTTTTACTCCCTCTCGCCCGCCACACTCTGCCTTG
TCTCATTTGTATACTTTTGTCAACTTCTCCCTTGCTCGCCAATGGCTTCT
ACTGCTACCGTTCATCTGAGTTTGGAGATAAGTTTATTGTTGCTGTAAGT
TACAAACCTCTGAAGAGTTGTTTAATGGTTTGAACTTTAAATCTTTCCCC
CCAAGTCCATGCTTGGCAAGGTTGGCCCCTAGTTTCTAGCCCTGTTTGTA
GTTAGTGGGAATTTTAGGACAGGGGCCTATGACATTTTTGTTTTTGTAAA
TTTGAGATTACTCTCTGTAGAGTGAGTTCTTTCACTGTCCTTCCTTTCTA
CTTATCATTAAATAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAACACCTGAAAAAATGTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCC
ACTGTTGCTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
TGGTTTCTCAGAAAATTGGACATGGTACTACTGGAGGATCCTGCAATACC
TCTCCTGGGCATATATTTAGAACACCCCCCCCCCTAGTAAGAAAGAAACA
TGATCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TTTACACAATGGAATACTACTCAGCTATTAAAAAATGAATTTATGAAATT
CCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCC
AAACACAAAGGAACTCGCACAATATGTACTCAATGATAAGTGGATATTAG
CCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAATGCAT
GAAATTCAAGAAGAACGAAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_h01.b1 MSMg01no170_h01.b1 CHROMAT_FILE:
MSMg01no170_h01.b1 PHD_FILE: MSMg01no170_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:23 2005
         (322 letters)



>mm_chr12_53147089_53147810
          Length = 722

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagattttgtcctttgggatttaacacaaatttgtgttctcttagaagcatttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagattttgtcctttgggatttaacacaaatttgtgttctcttagaagcatttc 264

                                                                       
Query: 65  ctgggcaccctcacttcatcctggcctagatgttccttgtctatgttccttgaacattgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggcaccctcacttcatcctggcctagatgttccttgtctatgttccttgaacattgt 324

                                                                       
Query: 125 gtacgtaattgcactgtgaagctctgaggtggttttcctgtttgcctgcctcactgtggt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacataattgcactgtgaagctctgaggtggttttcctgtttgcctgcctcactgtggt 384

                                                                       
Query: 185 ttcaacatttgcaacctgattcatttatcttcgatactctagagcataacaagataccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaacatttgcaacctgattcatttatcttcgatactctagagcataacaagataccag 444

                                                                       
Query: 245 gcctactgggcctcagtgagtatttgttgcatagataaggaactcgagtctatgtcaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctactgggcctcagtgagtatttgttgcatagataaggaactcgagtctatgtcaggg 504

                   
Query: 305 tcttcttg 312
           ||||||||
Sbjct: 505 tcttcttg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)