Query= MSMg01no170_i07.b1 MSMg01no170_i07.b1 CHROMAT_FILE:
MSMg01no170_i07.b1 PHD_FILE: MSMg01no170_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:29 2005
(327 letters)
>mm_chr12_6921254_6921980
Length = 727
Score = 557 bits (288), Expect = e-163
Identities = 303/308 (98%)
Strand = Plus / Minus
Query: 20 gttttagaaatgacctatcaagtgataagataaaggaaactatcaaaggaggggcaggga 79
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 727 gttttagaaatgacttatcaagtgataagataaagtaaactatcaaaggaggggcaggga 668
Query: 80 gaaacaggggtacaatacagacatcagaaatgaaagagaggtgatactgatcacttacag 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaaacaggggtacaatacagacatcagaaatgaaagagaggtgatactgatcacttacag 608
Query: 140 aaactaagcagcaatgagagaatactgtaaaataactgtttacaggttggatgactacaa 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaactaagcagcaatgagagaatactgtaaaataactgtttacaggttggatgactacaa 548
Query: 200 actgaaccacttccatgaaatatatgggataacatgattctcacaggagaggaatactgt 259
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actggaccacttccatgaaatatatgggataacatgattctcacaggagaggaatactgt 488
Query: 260 ctaaatacatatgaatcaaattgaatcgcaccaacatcctgtccactaaccatccaccat 319
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 487 ctaaatacatatgaatcaaattgaatcgcaccaacatcctgtccactaaccatttaccat 428
Query: 320 tttctgat 327
||||||||
Sbjct: 427 tttctgat 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no170_i07.g1 MSMg01no170_i07.g1 CHROMAT_FILE:
MSMg01no170_i07.g1 PHD_FILE: MSMg01no170_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:29 2005
(289 letters)
>mm_chr12_6789634_6790322
Length = 689
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%), Gaps = 2/289 (0%)
Strand = Plus / Plus
Query: 1 tgttctccacttctgagtctggtattttaattttcctcatatatctgagttcaggtagca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgttctccacttctgagtctggtattttaattttcctcatatatccgagttcaggtagca 260
Query: 61 tttacctctctcagttcagcttttttttaacttagtggaatgtcctctaaatacatttcc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tttacctctctcagttcagcttttttt-aacttagtggaatgtcctctaaatacatttcc 319
Query: 121 atgattaaaataatgaggtttctactttttt-atggctaaagaatgaaacaaaaacacta 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 atgattaaaataatgaggtttctactttttttatggctaaagaatgaaacaaaaacacta 379
Query: 180 attagtatcaaggacaaatgttcctgaggagagaatgtgattattcggttacaacagtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attagtatcaaggacaaatgttcctgaggagagaatgtgattattcggttacaacagtga 439
Query: 240 attagacaatataataaactgtagttcattcctggggaaaatgtccctg 288
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 attagacaatagaataaactgtagttcattcctggggaaaatgtccctg 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
