BAC Information

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BAC

Clone NameMSMg01-170J03
Chromosome12 (Build37)
Map Location 99,707,568 - 99,707,900
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170J03.T7 (MSMg01no170_j03.b1)MSMg01-170J03.TJ (MSMg01no170_j03.g1)
ACCAG367094AG367095
length728714
length of high quality
(start - end)
327 (50 - 376)333 (382 - 714)
definitionCHROMAT_FILE: MSMg01no170_j03.b1 PHD_FILE: MSMg01no170_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:33 2005CHROMAT_FILE: MSMg01no170_j03.g1 PHD_FILE: MSMg01no170_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAT
GAGATCTGACGCCGTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTGCTT
ATCTATAATAATAAATAAATCTTTGGGCCGGAGCAAGCAGAGAGTGAGTG
GGGTTGACCGGAGAGAGCAGAGGTCCTAAATTCAATTCCCAACAACCACA
TGAAGGCTCACAACCACCTGTACAGCTACAGTGTACTCATATACATAAAA
TAAATAAATAAATCTTTAAAAAAATAAGCTGTCTTTTCTAAGGTTTATTT
TTATGTGTATGGATTTGTTTTACTCCCCCCCCCCGTTATATGTGTAGCAT
ATATATTTATACATGCATATCACATTCATGCCTGCTGCACATGGAAGTCA
GAAGAGGCCCCCTGGGTGGGTTATTGCTGGTTGTGAAGCACCATTGCTGG
GAACTGGACCTGGATCCGCTGGAAGAGCGCTCTTCACCACCAAGCCATCT
CTCCAGTCCATAATTTCATTTTTTAAAGAAGCTTTTGGAGGGGCTAGGAA
AACTGCAAACACTATATGAAAAGGATCCTGGAGAAGATAAGTTGCGATCC
GACAGATCTGGTTGCCTGGCTCCTGACTTGTTGCTTACTAAGTCCGCGAA
TGGTCCGTGAGACTAAGTTCCCCGTGCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACATCAATGAATGCAGTCTAAAACA
AACAATGAGTTCTTCGGAGGAGCTAAGGATTACTACCCTATTAAGTCGGT
GCCTTGCAGAACACCAAACTAGCCCATGAAAATTGGTGATAAAGAGAGAA
GATAAAGTTCATCTACCTTTTAGGCTGATTTTTATGATGCCAGTAAAACT
GTGAATGCTAATAAAACTCTCTCATTACACTCATAACTCAAGAGTTGCTA
TTAATTTTAGATACAGGTTACCATGGGGTAGAGCTAATACATCCATGGAT
TTTAAGTATTTTTTTTTTGCCCCCCACCCCAACATTTTAATTAATAAGAC
TCCAGAGGTTTTAAGAAGCAAATCGTCTCACAGATGGGCAAGAGGTAGGA
GAGAGTGAATTCCCATACAGTTTTCTAGCTGAGTCCCTCTGTTGGACGAC
GCTTTTGGATAAATTTGTACAAGTTTCCCTTAGGGAGCAACAAACAGAAA
AAGATTCACCCTATTCCTTTTTAGACTTTAAAACTTAAGCGTTTTAAGAC
TTAAGACCTGGAAGGAGGTGAAATCAGTCAAAAATTGAACACAGAGTAAG
TGGTACCAAGCAGAGCAATGGACTAGAAGAGCAAAGCACAGAATATTTCC
ATCCATGAAGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_j03.g1 MSMg01no170_j03.g1 CHROMAT_FILE:
MSMg01no170_j03.g1 PHD_FILE: MSMg01no170_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:33 2005
         (333 letters)



>mm_chr12_99707368_99708100
          Length = 733

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttaattaataagactccagaggttttaagaagcaaatcgtctcacagatgggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattttaattaataagactccagaggttttaagaagcaaatcgtctcacagatgggcaa 260

                                                                       
Query: 61  gaggtaggagagagtgaattcccatacagttttctagctgagtccctctgttggacgacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaggagagagtgaattcccatacagttttctagctgagtccctctgttggacgacg 320

                                                                       
Query: 121 cttttggataaatttgtacaagtttcccttagggagcaacaaacagaaaaagattcaccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 cttttggataaatttgtacaagtttcccttagggagcaacaaacagaaaaagattcgccc 380

                                                                       
Query: 181 tattcctttttagactttaaaacttaagcgttttaagacttaagacctggaaggaggtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcctttttagactttaaaacttaagcgttttaagacttaagacctggaaggaggtga 440

                                                                       
Query: 241 aatcagtcaaaaattgaacacagagtaagtggtaccaagcagagcaatggactagaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcagtcaaaaattgaacacagagtaagtggtaccaagcagagcaatggactagaagag 500

                                            
Query: 301 caaagcacagaatatttccatccatgaagactc 333
           |||||||||| ||||||||||||||||||||||
Sbjct: 501 caaagcacaggatatttccatccatgaagactc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)