BAC Information

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BAC

Clone NameMSMg01-170J09
Chromosome12 (Build37)
Map Location 41,310,131 - 41,310,416
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170J09.T7 (MSMg01no170_j09.b1)MSMg01-170J09.TJ (MSMg01no170_j09.g1)
ACCAG367104AG367105
length737709
length of high quality
(start - end)
267 (47 - 313)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no170_j09.b1 PHD_FILE: MSMg01no170_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:34 2005CHROMAT_FILE: MSMg01no170_j09.g1 PHD_FILE: MSMg01no170_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGTTTACAACTGTGTGTGCATGCATGGAAGCCAGTATTACCCT
CCACCTCACTTTGTGATTGGGGGTCCACTGAATGCAGAGCTTGTATTTTA
GCTAGCATGACTTCACAGCAAGCCCTCCTGTCTCACTATCCCTAAGATGG
AGATACAGATGCATGCTACCAAGCCTGGCTTTCACGCGGGGGCTAGGGAT
CTGGATTTAGTTTCTTATGCTTCTGACGAAAGCAAGCCCCACCGAGTCAT
CTTCCTGGTCCTCACGATTCAGATTTTTAATAATAGTAAAATAGGAAGCA
TGTTTACATTGGTTCACCGTTCTGGACCCCAGGTAAATGAATANGAGAGA
TAGTACTCACTGGAGCAAAGAAAAAATAAATTTTATCATGCCGGCTAAAG
ATGCCCTGGCGAGAATAACCCCGCATAGTGCCCGTATTTCCACAAAAGAC
CAAGGTATTAAAAGATGCCAGATCCTCACGTCTATTCTTCAAGACCACTA
AATTCCCGATATCTGGATTCTTCTTCTCCTTTACAACAGAATATACTCGC
ATTTAATTATGCCCCACGTCTTTTACCTTCATAACCCATCTTAATAACGA
CCCCAATGTCTTTCTGCCCCCATTACCCCGCGACCTAATTTCTACACTGT
TCCACCATAACCCCTGTGACTCCTATTCCTCGGTCCC
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTTCAGAGTTGTCTGTCAAC
AGACATAGGCAAGAAGAGAGAAACGAGGGTTTTAGTGTCTGCTTTGTACC
AATCAACGGGCTAGGTGTTGAGGTAGATAGATACTTTTCCATCCTTATAC
TTGGTACCTAGTTTACCATAGCTATGGTCTGAGCTATAGAAATGAAGCCT
TGGGGGATTTTATCATGTAAAGTGGTTGTAAAATTAGTAATGAGCCAGTG
ATCATTTGAATGAAAAATATCTTCTGTAGCCTCAGGCTTTGGAACACTTA
TTTCCCATTTAGTTGNGCTCCTNGGCGAGTTCCGGGTGGTCCAGCCTTGC
TGGAGGAAGTAGTCTCAGAGAGAAGAAATAAAACAAGANTAGCCTTGCGC
CTCTTCAACATAGCCGTCTCTTGCCTGTGCTTCTTTTTGAAATAGGAGCT
CTCAGCTTCCTGCTCTTGCCACCATGCCTGCCATTCTCTGCCATGCCTCT
GTACCATGATTGACTGTTACTCCCTTGTTCATGTTGTTTTATCACAGCAA
GAGAAGAGTAACTTAGACTGAGTCTTTTCCTACGGTGTGCATGCTAGGAC
TTGAATGTAGCCTTACTCCTGACTCTACCACTGATCTATACTCACGGTCC
ATTACACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_j09.g1 MSMg01no170_j09.g1 CHROMAT_FILE:
MSMg01no170_j09.g1 PHD_FILE: MSMg01no170_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:35 2005
         (284 letters)



>mm_chr12_41309931_41310619
          Length = 689

 Score =  491 bits (254), Expect = e-143
 Identities = 276/286 (96%), Gaps = 5/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtttcagagttgtctgtcaacagacataggcaagaagagagaaacgagggttttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cttgtttcagagttgtctgtcaacagacataggcaagaagagagaaatgagggttttagt 260

                                                                       
Query: 61  gtctgctttgtaccaatcaacgggctaggtgttgaggtagatagatacttttccatcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgctttgtaccaatcaacgggctaggtgttgaggtagatagatacttttccatcctt 320

                                                                       
Query: 121 atacttggtacctagtttac-----catagctatggtctgagctatagaaatgaagcctt 175
           ||||||||||||||||||||     | ||||||||| |||||||||||||||||||||||
Sbjct: 321 atacttggtacctagtttacttgtacctagctatggcctgagctatagaaatgaagcctt 380

                                                                       
Query: 176 gggggattttatcatgtaaagtggttgtaaaattagtaatgagccagtgatcatttgaat 235
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggattttgtcatgtaaagtggttgtaaaattagtaatgagccagtgatcatttgaat 440

                                                         
Query: 236 gaaaaatatcttctgtagcctcaggctttggaacacttatttccca 281
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaaatatcatctgtagcctcaggctttggaacacttatttccca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 689
Length adjustment: 9
Effective length of query: 275
Effective length of database: 680
Effective search space:   187000
Effective search space used:   187000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)