BAC Information

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BAC

Clone NameMSMg01-170P20
Chromosome12 (Build37)
Map Location 55,526,969 - 55,527,110
singlet/doubletsinglet
Overlap genenone
Upstream geneNpas3, Egln3, EG665239
Downstream geneEG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170P20.T7 (MSMg01no170_p20.b1)MSMg01-170P20.TJ (MSMg01no170_p20.g1)
ACCAG367377AG367378
length737747
length of high quality
(start - end)
141 (440 - 580)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no170_p20.b1 PHD_FILE: MSMg01no170_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:06 2005CHROMAT_FILE: MSMg01no170_p20.g1 PHD_FILE: MSMg01no170_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCCCATTTTACAGTTTACTGGCTATGTCCTTTGTACAAGTTGCC
TAATCCCTGAGAGGCCTAGTTTGCTCACACGTTAATGTGATTATGGTATC
TATTCATCGCTGTGCTTCACTGGCTAAATGAATCCACACACATTAATTGC
TTTGTAAAGTGATTTTATTTTATTTTTCACGACTCAACAAACACTCACCA
GTTTGTTTTTGATATGGAGAACAGAACAAAAATTTCCCCTGAGAAAATAC
TGTTTGATGAGGACAGTGATGTTATCAAAATCCTTGAAAGGATTACTGTT
ATCCTGTCATTTCGTGCATGTCCATNTCTNACCCCAACTTCCACAAGTAG
TGCTTTCCCACCTAAACTTGCTCAAATATAGAAAGCCATGAATATGTAGA
ACACAGACACATAAGCACATGCTTTTGAAACTGGAAGGTCATAAATGAAG
ACCACTTTGCTTCTTCATGGTTCCGAGTGTATTGAGGGCATGACCAATCA
TCTCTCTTTTGGTAGGTCAGGGTATACAACAGTGCAGTCAAGAGTGGCCA
GTGCACTACGCTGCATTTTATCTTGGGACAAATTAAAGTCAAATACTGTG
AAACTGTCACTGTGATCATAAATTATTAAGGGAGTTCAGCTACCATAGCC
AGTTACTTTCCTCAAGAGTGTGATAGAATGTCTGACC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGCCAGAGAGAAACAACTTTTTCA
AGACAACAATAATAACAATGATACACCCAGAAGTGAGTTTTGCTGGTATG
TGCCTGGGATCCTAGCACTCAGGAGGCAGAGGCAAAAGGACTCCAAGTTC
AAGGCTAGTCTGAACTCCATGGATTCAAGGCCATCCAAGGCTAGGTGATA
AGATTCTGAACTTAAGAATAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA
AAGGAAAGGAGAGGAGAGGAGAGGGTAGGGGAGGTNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTGGGTGGCTTCCNGGGGCGGGNCCCCCGGGGGGGGG
TGGGGGGGGGNGGGGNNNNNGNNNNCCCCAAAAAAAAAAAAAAAAAAAGG
GGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNGGNNNGNNNGNNNGGGGNN
GTTTGGNNNGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGG
GGGGGGTGGGGGNNGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGG
GGGGGGGGGGGGGGGGGGGGAAGGAAAAGAGGTAGGAAGNGGAAAAGAGA
GAAGAGGAGAGGAAGAAGGAGAGGAGGAAAGTTAGTTTATTTAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_p20.b1 MSMg01no170_p20.b1 CHROMAT_FILE:
MSMg01no170_p20.b1 PHD_FILE: MSMg01no170_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:06 2005
         (141 letters)



>mm_chr12_55526769_55527310
          Length = 542

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatatgtagaacacagacacataagc-acatgcttttgaaactggaaggtcataaatga 59
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 342 gaatatgtagaacacagacacataagcaacatgcttttgaaactggaaggtcataaatga 283

                                                                       
Query: 60  agaccactttgcttcttcatggttccgagtgtattgagggcatgaccaatcatctctctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agaccactttgcttcttcatggttccgagtgtattgagggcatgaccaatcatctctctt 223

                                 
Query: 120 ttggtaggtcagggtatacaac 141
           ||||||||||||||||||||||
Sbjct: 222 ttggtaggtcagggtatacaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 542
Length adjustment: 8
Effective length of query: 133
Effective length of database: 534
Effective search space:    71022
Effective search space used:    71022
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)