BAC Information

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BAC

Clone NameMSMg01-171C05
Chromosome12 (Build37)
Map Location 67,222,275 - 67,222,591
singlet/doubletsinglet
Overlap genenone
Upstream geneFancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171C05.T7 (MSMg01no171_c05.b1)MSMg01-171C05.TJ (MSMg01no171_c05.g1)
ACCAG367478AG367479
length721727
length of high quality
(start - end)
323 (46 - 368)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no171_c05.b1 PHD_FILE: MSMg01no171_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:17 2005CHROMAT_FILE: MSMg01no171_c05.g1 PHD_FILE: MSMg01no171_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTATCAACAGTATTACAAGCACAAATATATACAATTCACAGAA
ACCCAGATGTTTTAACAATTAAATTTAAACAAATTTTTTTTCAAACATTC
AATAACTGCTTCCAAATATGCAATATCAAGAGATCTGTGAAATATTCATA
TTGAAATAGATATAGCATTGAATCCTACATTGATAGACTTCTAAAAACAT
AAAACTAAAGGAACTACAGCTAAACATTCTCACCAATAAACAGTTGGGTG
CATACTACAGTATCAGAATGAGGAATTCATGCATCAGGACCACATGGGAC
TTTTCTTTAGGGATGCTTTGGTGCACACACCCCCCACTGCTAAGACATCA
ATTTATGTAATTCATCTTATTGAGTGACAGAAAGAAAACCCATACAATAT
AACTCCTCTTTTAGATATTTAAACCTTGGTGGGAAAAAAGACGATTTCTA
CACTGTAAAACATATGATAATTATAAAAATTTCTTCCAGTCAGAAACTTT
CCAAAATATCCAGAACTATATTAGCATANAACAAAACCTAAAGCATGTTA
GGAGATAAACAGAAGGCGTGACCCATTATACATTTAATAATGCTCCAGAA
NATCAAATTGAAAAGTAATACTTAGGAAAAATTAGAAGCAGCAACAAAAC
CCGCAAAGCTATGTGGTAAAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAACAGAACTGTACTGACTGC
AGGAACTAAACAGAACTAAACAGACTTGCACAGACTCAACTGAACTCAAC
TGCATTTAATTGAACTGAAGCTAAACTGCACTGAACTGAAGTCAACTGAA
CTTCACTGCATTGTCTGACCTCAACTGAACTGCCTTCCATTCTCTCGTCT
TGTTTCCCTTTCCTGTTTGTTCTCTTTGGAGTTATGTATATCTTATCTCT
GTATCATTCTATCAGTTCTTTCTCTGATTCCTTGCTTTGTTTTCCCCTCT
AGAAAACATCATTTTTAAACATCGCCTGCTTTCTTTTACAAACTAACCTT
ACCTACATTGGTTGGGATTAAAGGTGAATCTGTACTAAGGGTATATCTGT
ATTCCAGCCAGAGTAGCCATGTTGCTGAATTAAAAGTTGTCTACATATGC
TCCTGTGTTAGGCTTCTTATTTATTGAAAATGTATATCACAGGATCTTTG
CATTTTTGTGGCAAAGAAAAGCATTGGGTAGAGAGTTCATAACTGGGTAC
ACAATCTATTTTTTGCTTCCTTGTTTAGTGAACATGGACTTTACTTCAAT
ATTTAACCTCATTAGCTTTCAGAGAACTGGGCCTAAATCCAAACTTAACA
TTAAGACTTTGTAAATACTGACATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_c05.b1 MSMg01no171_c05.b1 CHROMAT_FILE:
MSMg01no171_c05.b1 PHD_FILE: MSMg01no171_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:17 2005
         (323 letters)



>mm_chr12_67222071_67222793
          Length = 723

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttatcaacagtattacaagcacaaatatatacaattcacagaaacccagatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcatttatcaacagtattacaagcacaaatatatacaattcacagaaacccagatg 462

                                                                       
Query: 65  ttttaacaattaaatttaaacaaattttttttcaaacattcaataactgcttccaaatat 124
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 461 ttttaacaattaaatttaaacaagtgttttttcaaacattcaataactgcttccaaatat 402

                                                                       
Query: 125 gcaatatcaagagatctgtgaaatattcatattgaaatagatatagcattgaatcctaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcaatatcaagagatctgtgaaatattcatattgaaatagatatagcattgaatcctaca 342

                                                                       
Query: 185 ttgatagacttctaaaaacataaaactaaaggaactacagctaaacattctcaccaataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttgatagacttctaaaaacataaaactaaaggaactacagctaaacattctcaccaataa 282

                                                                       
Query: 245 acagttgggtgcatactacagtatcagaatgaggaattcatgcatcaggaccacatggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acagttgggtgcatactacagtatcagaatgaggaattcatgcatcaggaccacatggga 222

                            
Query: 305 cttttctttagggatgc 321
           |||||||||||||||||
Sbjct: 221 cttttctttagggatgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)