BAC Information

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BAC

Clone NameMSMg01-171F19
Chromosome12 (Build37)
Map Location 47,577,614 - 47,577,900
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171F19.T7 (MSMg01no171_f19.b1)MSMg01-171F19.TJ (MSMg01no171_f19.g1)
ACCAG367630AG367631
length740743
length of high quality
(start - end)
320 (45 - 364)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no171_f19.b1 PHD_FILE: MSMg01no171_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:34 2005CHROMAT_FILE: MSMg01no171_f19.g1 PHD_FILE: MSMg01no171_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTACAGAAACTAAACAGGGCAGTAAGCTGGAGGCAGGACCTGATT
ACAACCCAGGACCACCACCCGCAATGACCTGGGTCCTCCCACTTCAGTCA
CTTAGTTAAGGATATGCCCTTCAGGCCTGTCTACACACTGATGTAAGGAG
GCATTTTCTCAACTGAGGCTCCCTATTCTCCTCTCTCCAATGACTCTTGT
TTGTATCAAGCTGACTGAAAACTAACCAAAACAATAGCTATGTTATTGTT
ATTATTTAATAGTTTTAATAGTAAACAACATACCAGGTTCACTTACCAAT
CTGAACAGTATATTGTTTACCACCCCCCCCACTATAATTACAGATATATT
AAACTGTGAAAGAAATTTAAAAGGTATATTAGAAACTAACAACTATGGTT
TGAAAAATCATCATGATAACTTAAAAAATAGAATGGATTAATTAGAACAG
AAAAATCAAGAATTTATAATTTTAGAATGAAAAAAATTATTCATCTTTAA
AATAAAAGGATGCTAGGCATATGGTGCAGACTTTTAATCCCAGCACTAAG
GAAGCAGAGGCAGGCTGATCTCTATCAAATCAAAACTCATAGGAGAAAGA
ANATATGTTCCATCTGCATAGGTAGACAGATTTCTGTGAGTTCAAGGCCA
GCCTGGTCTACATTGTGCATTCCAGGACATCCTGGCCTAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAAGATGTTTGAACTGAAAGATGTCATAT
AAACAAGGTACTACCTGCACCTCTGTTTCCTAAAATACAGCTGCTCATCT
CTCCAGGCCATTGAACAGCTCTGGTCCAAGAGCCACAACACAGCTGTACT
GAAGGAGAAGTAATACCTGGTGTTCATTTGAAATCTTCGGACAGAAAAGC
CAGTGTGGTTTTACCACTAATGTTCTTACACAGTACCATTAGTCAAAATG
AGTCTCATCATTTAAAATTAGTTTTAAATGATGGTTGTAAATAATAAAAA
TAGTATCTTGTTATACTGCCCCCACCCCCGCCAAGTCAAAGATCATTGAA
ACATTTTTTGCTTGTTCAGTGACCCATCAAAAAGAACGTTTTTTATCAAA
GCTGGTTTGTATTCCTTTTGGGAAACTTCATCTGATGGCTGCTGGGAGGA
AGACCTTGAGGTTCTTAAGTAATTTAAAACAAAACAAAACAAAACAAAAC
AAAACAACAACAACAACAACAACAACAACAAAAAAGAAAAACAGCAATGA
CTATGCTGTCACATCCTGAGAAAATCAGAGAAGTAAATACCTTCTCTGGG
AAGAGATGATGTGCTCCAATAACAGTGAGAGAAGTCTTATCACTGTTCTT
CACATATTAAGTTCTGTCTACTGCCACAGTACTGATGATCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_f19.g1 MSMg01no171_f19.g1 CHROMAT_FILE:
MSMg01no171_f19.g1 PHD_FILE: MSMg01no171_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:34 2005
         (291 letters)



>mm_chr12_47577414_47578104
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagatgtttgaactgaaagatgtcatataaacaaggtactacctgcacctctgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 487 caaagatgtttgaactgaaagatgtcatataaacaaggtactacctgcgtttctgtttcc 428

                                                                       
Query: 61  taaaatacagctgctcatctctccaggccattgaacagctctggtccaagagccacaaca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taaaacacagctgctcatctctccaggccattgaacagctctggtccaagagccacaaca 368

                                                                       
Query: 121 cagctgtactgaaggagaagtaatacctggtgttcatttgaaatcttcggacagaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagctgtactgaaggagaagtaatacctggtgttcatttgaaatcttcggacagaaaagc 308

                                                                       
Query: 181 cagtgtggttttaccactaatgttcttacacagtaccattagtcaaaatgagtctcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagtgtggttttaccactaatgttcttacacagtaccattagtcaaaatgagtctcatca 248

                                                          
Query: 241 tttaaaattagttttaaatgatggttgtaaataataaaaatagtatc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttaaaattagttttaaatgatggttgtaaataataaaaatagtatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)