Query= MSMg01no171_n06.b1 MSMg01no171_n06.b1 CHROMAT_FILE:
MSMg01no171_n06.b1 PHD_FILE: MSMg01no171_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:08 2005
(317 letters)
>mm_chr12_37989579_37990295
Length = 717
Score = 586 bits (303), Expect = e-172
Identities = 312/315 (99%), Gaps = 1/315 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatgatcttcctgcctcggcctcctgactgctgggttaacaagcatatg-aaaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 609 ggaattcatgatcttcctgcctcggcctcctgactgctgggttaacaagcatatgaaaaa 550
Query: 63 aaaatgtctagcctttgtctcattttgcactttaaaagtttattcttattcattcttaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaatgtctagcctttgtctcattttgcactttaaaagtttattcttattcattcttaag 490
Query: 123 acaattaacaaataaactgctagtgtcctgaataactgccaaattgtgagaatgtttgtc 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 acaattaacaaataaactgctagtgtcctgaataactgccaaatcgtgagaatgtttgtc 430
Query: 183 atttttcttcttggttgttttgagttgctttagtctgacaaaaataagaattctgaaagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atttttcttcttggttgttttgagttgctttagtctgacaaaaataagaattctgaaagc 370
Query: 243 atccaacaagatccccagtactgtgtgaaaagtaacttgcatgacagaaagcagaattgt 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 369 atccaacaagatccccagtactgtgtgaaatgtaacttgcatgacagaaagcagaattgt 310
Query: 303 cataactgaggctga 317
|||||||||||||||
Sbjct: 309 cataactgaggctga 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_n06.g1 MSMg01no171_n06.g1 CHROMAT_FILE:
MSMg01no171_n06.g1 PHD_FILE: MSMg01no171_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:08 2005
(279 letters)
>mm_chr12_37894598_37895276
Length = 679
Score = 516 bits (267), Expect = e-151
Identities = 276/279 (98%)
Strand = Plus / Plus
Query: 1 aatagtctgctatcaactcaaacaatgctttaagcagttcagttaatgagaactaaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagtctgctatcaactcaaacaatgctttaagcagttcagttaatgagaactaaatga 260
Query: 61 gataaattattctatagatgcctttactggattttacttggatggaaaataacttgttcg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataaattattctatagatgcctttactggattttacttggatggaaaataacttgttct 320
Query: 121 gttagcactcagagagtactttctgtataaattcatatttaggagaatccaacctgcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagcactcagagagtactttctgtataaattcatatttaggagaatccaacctgcaga 380
Query: 181 tggttaacagtcttgctagctagagaaacattcctgaaaggcaaatgcaaacatctttat 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttaacagtcttgatagctagagaaacattcctgaaaggcaaatgcaaacatctttat 440
Query: 241 ggacagtgttcattataccaggcgctattagggcaagag 279
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ggacagtgctcattataccaggcgctattagggcaagag 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
