BAC Information

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BAC

Clone NameMSMg01-173A11
Chromosome12 (Build37)
Map Location 14,036,406 - 14,036,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173A11.T7 (MSMg01no173_a11.b1)MSMg01-173A11.TJ (MSMg01no173_a11.g1)
ACCAG368760AG368761
length715781
length of high quality
(start - end)
332 (370 - 701)49 (76 - 124)
definitionCHROMAT_FILE: MSMg01no173_a11.b1 PHD_FILE: MSMg01no173_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:37 2005CHROMAT_FILE: MSMg01no173_a11.g1 PHD_FILE: MSMg01no173_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGGG
ATCCCATATCAGCTCCACAGAGACATTGCTGCTCCAGGCTCTGTTCCTTA
GCCTGCTTTGCCTACTCTCACAGAACAAGGACAAACTCCATGCTCTTATT
GCAGACAGAACACCCAGTGGGCATCCAATGTAGATCTCCCTTTCTACATC
TGCTTTTGAAATGGTCCATGGTTCTATCAACTTTCACATTCTGCATATCT
GCATCATGCACGGTGCCTACTATTATGACAGTCAAGAAGCAATGTATAAA
GATCATTCTATAAAGATGCTGTGGAGGTATGTGTACCAATTATATGATGT
CTTAACCACCCCCACCCCTATGGTAAGAAGTTTATACTGGTTCCTTTGCT
GGTTTTAGGATATTATAGAACGAACATTCTCTCAAATTCTTGACTATTCT
CTCATAAGATGGAACTATTTAAAAGGCACAAATGGAATAATTAGGTCAAA
AGTGCTTTGCAAACGGAAAGCACCTCACACACTTGAAATTATATCAATTA
TATCTTGCCTAAGTATGGTCTCAGTTCCCAAAGATTGGTCTACTGAAGTT
CTAATCTCTGGGACTGGAGTGTGTTTGTGTTTGCACATAAGCTCTTGAAA
GAGGCAATTAAGGTAAATCTTTTTTCTTAAACAGCTTACCATATATGAAG
AACTGAGAAAATGAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGCATGAGGAGAAAGAGGAGTGGAG
TGAAGGGGAGAGGGGGAGGATGNTCCCCTNTNNNTTTGTTNTTTTTTTTN
NNNTTTTTTTTTNTNTTTTTTTNTTTTCCNTTTNNNTTNNTTTTTTTTTT
TTNNTATTTTNNNTTTTTTCTTTTATTTGTTTTTGTTTTTCTTTNNNTTT
TTTTTTTTTGTTTTTGGTNTNTTGNNTTTTTTTTTTTTTTTNTTNNNTTT
TNTTTTTTTTTTTNNNNNTNNNNNNTTTTTTTTTTTTTTTCGGGNGGGNT
TGGCGGGGGGGGNGGGGGTGTTTTTGTGGTTTCCCAAGGCAGGGCCCCCC
GGGAGGGGATTTATGATTAAGGTTTTGTTTTTATTCACACAAAAAAAAAA
AAAAAACCTTGTGGGGGGGGGGGGGGTGCTCCTTCTCCTACTCGCATTTC
TATTTTCTTCCTCCCCATCTTACACGTCTCTTTGCTCGCGCTTCTCACCT
ATAACTTAATATCTACCCTTACTCCCTGCCTTATCTTCGTCCCCCTATAC
TGTAATTCATATCGATTATTCGTGCCTTTGTTATTGCCCTCTTCTACTTT
TTCCTAGATTCCCTTTTTTCCCTACGGTTCGCTCTTTATTTTTTTTGTAT
ATTTCTTCTTATCTTTTTTGTTTTTCTCCCGTGTTTTGTCCCCCTCTCTC
CTTTTATGTATCCCGTCATCCTATTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_a11.b1 MSMg01no173_a11.b1 CHROMAT_FILE:
MSMg01no173_a11.b1 PHD_FILE: MSMg01no173_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:37 2005
         (332 letters)



>mm_chr12_14036206_14036937
          Length = 732

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtaagaagtttatactggttcctttgctggttttaggatattatagaacgaacattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtaagaagtttatactggttcctttgctggttttaggatattatagaacgaacattc 260

                                                                       
Query: 61  tctcaaattcttgactattctctcataagatggaactatttaaaaggcacaaatggaata 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaaattcttgactgttctctcataagatggaactatttaaaaggcacaaatggaata 320

                                                                       
Query: 121 attaggtcaaaagtgctttgcaaacggaaagcacctcacacacttgaaattatatcaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaggtcaaaagtgctttgcaaacggaaagcacctcacacacttgaaattatatcaatt 380

                                                                       
Query: 181 atatcttgcctaagtatggtctcagttcccaaagattggtctactgaagttctaatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcttgcctaagtatggtctcagttcccaaagattggtctactgaagttctaatctct 440

                                                                       
Query: 241 gggactggagtgtgtttgtgtttgcacataagctcttgaaagaggcaattaaggtaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggactggagtgtgtttgtgtttgcacataagctcttgaaagaggcaattaaggtaaatc 500

                                           
Query: 301 ttttttcttaaacagcttaccatatatgaaga 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttcttaaacagcttaccatatatgaaga 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)