BAC Information

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BAC

Clone NameMSMg01-173D22
Chromosome12 (Build37)
Map Location 74,410,287 - 74,410,600
singlet/doubletsinglet
Overlap geneSlc38a6
Upstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5
Downstream geneEG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173D22.T7 (MSMg01no173_d22.b1)MSMg01-173D22.TJ (MSMg01no173_d22.g1)
ACCAG368909AG368910
length743796
length of high quality
(start - end)
317 (45 - 361)241 (177 - 417)
definitionCHROMAT_FILE: MSMg01no173_d22.b1 PHD_FILE: MSMg01no173_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:53 2005CHROMAT_FILE: MSMg01no173_d22.g1 PHD_FILE: MSMg01no173_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGTAGGCTGAGAAGTCTGGACTTGTAACATCTCCCTATTGTAGTA
GACTCTGGCTTTACAGAGCATGAACCTTTAAAGGTTTTCCCCAAAGTTAG
TACCGCTGCTCTATCCATGATTGTAAGGTGGCTAGACCCCAGCCGCTAGA
TCTCAGTTACCACTGGACAGTTTTTCCTGCTTTTGGTATTTCAGAACATT
TAAGAGAATCCCAGGTCTCCCCTAGATGGCCTACAAGATGAGAGCTACCA
GATGCCTCTCAGTTGGTTACAGTATTAGTGTGCTGACATTGCTTTTTTTT
TTTACCATAGTTAGTACCTACTAAGACTATACCATAACCATTAATATGGA
CATTTAAGAAACAGAATCAGTATGAAAAAATACAATAGAGAAGTATAATA
AAATGAATCCTTAGGGAATCTAAAAACAAAAACAAAACCAAGCTGTGTGT
GTGTGAGTGTTTCCCCTGCATGTGTCTCTATGCGCCATATGTCTCTGTGC
CCTCAGAGGCTGGAAGAGATCACCAGATCCCCTGAACCTGGAGTTACAGA
GCTGTGAGCTACAGACCCATCACTATTTGTCAAAGACAAATTCTGCAAAA
AACACCTAAATCTTGGGCACATGGGTGGCATTTAGAGTGGAAATTAACTT
TTCATAAAGAAAACTCTCCAAAGCCTTTGCAAGAAACAGCTAG
CCTTTCTTTTTTTTTTTTTCTTCCCTTGTTTNNNNGGTTNNNNNTTTTCT
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCACGGCTATACAGAGAAA
TCCTGTCTCAAAAAAAATTTTAACCAAAGAAAGAAAGAAAAGAAAAAGAA
CAAACAAACAAACAAAACCAAGAGGCAGGCATGGTGGTGCATACATTTAA
TCCCAACACTCAGGAGGCAGAGGCAGGCAGACCTCTCCAAGTGTGAAGTT
AGCCTGGTTTACAGAGTTAGTCCAGGGCTACACAGAGAAACCGGGTCTCC
TAAAAACAAAACAAAACAAAACAAAATAAAACAACAAAACAAAAAAGCAA
GTAGGCAAACAGATATTCATATATAAAACCACCCCACTCGATTTTGTGAA
GAGATGCCATGTAAGAGAAAGTGAAACAGACCAAAAAGAAAAAAAGGCTT
GGGGACTTCCCTGTAGACCTGGGCTACTCTCAAGTGTTGACAGAATCTCT
TTGAAAACTCAGTACATTTCCAGAAGGAGAAGCCATGAGAGCTTCCCTAT
CAGTTGACAGCCACAGCACAAACACTAAAAGCAGAGTTGTGTTTGTGGAA
GCAGACATCTTATTTCCCATGTAAAATTTAAACAAAACCAACTGCATTTG
GAAGGCAGTCTGTTTCTGTTCTCTGAATGTTTTAAAATGAGTTTTCGAGG
TAGTTGACTTAATCTAATGCGTATTTGGTTAGTTCTTAATTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_d22.b1 MSMg01no173_d22.b1 CHROMAT_FILE:
MSMg01no173_d22.b1 PHD_FILE: MSMg01no173_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:53 2005
         (317 letters)



>mm_chr12_74410083_74410800
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgtaggctgagaagtctggacttgtaacatctccctattgtagtagactctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgtaggctgagaagtctggacttgtaacatctccctattgtagtagactctgg 264

                                                                       
Query: 65  ctttacagagcatgaacctttaaaggttttccccaaagttagtaccgctgctctatccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttacagagcatgaacctttaaaggttttccccaaagttagtaccgctgctctatccat 324

                                                                       
Query: 125 gattgtaaggtggctagaccccagccgctagatctcagttaccactggacagtttttcct 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 gattgtaaggtggctagaccccagccgctaggtctcagttaccactggacagtttttcct 384

                                                                       
Query: 185 gcttttggtatttcagaacatttaagagaatcccaggtctcccctagatggcctacaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttttggtatttcagaacatttaagagaatcccaggtctcccctagatggcctacaaga 444

                                                                       
Query: 245 tgagagctaccagatgcctctcagttggttacagtattagtgtgctgacattgctttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagagctaccagatgcctctcagttggttacagtattagtgtgctgacattgctttttt 504

                         
Query: 305 ttttt-accatagt 317
           ||||| ||||||||
Sbjct: 505 ttttttaccatagt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)