BAC Information

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BAC

Clone NameMSMg01-173G21
Chromosome12 (Build37)
Map Location 37,646,368 - 37,646,836
singlet/doubletsinglet
Overlap genenone
Upstream geneAgr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173G21.T7 (MSMg01no173_g21.b1)MSMg01-173G21.TJ (MSMg01no173_g21.g1)
ACCAG369039AG369040
length738714
length of high quality
(start - end)
287 (63 - 349)582 (77 - 658)
definitionCHROMAT_FILE: MSMg01no173_g21.b1 PHD_FILE: MSMg01no173_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:06 2005CHROMAT_FILE: MSMg01no173_g21.g1 PHD_FILE: MSMg01no173_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCACTATATTTCGAGAATACCGCGGAATTCTTTGTTC
ATTTCTGAAACACATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCAC
CTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTT
GTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATT
TTTCCCCTGTGTTCTTATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA
TTTTTTTGTGTCTCCGCCCTTCATGTGAAGTTCTTTGATCCATTTAGATT
TGACCTTAGTACAAGGAGATAAATATGGATCGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGCCTTCAATTCTATTCCATTGGTCTACTTGTCTG
CCTCTATACCAGTACCCTGCAGTTTTTACTCACAATGCTCTGGAGTAAAG
CTTTAGGTCCGGTATGGTGTATCCACCCGATGTTTCTTTTTTCCCTTGAT
AACAGCTTTTGCTATCCTATTTTTTTTGTTCTTCCCGA
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTATCCTGTAGACTGTGTAA
TGAAGCAATTGTGAGTAAGGAAGCCAAGAGTTATGATATGTGTGTGACTG
GTTCCTCTGGTGTGCAAGAAACACACTTCAATGACAGTAATGCTTTGGAG
AAGGCAGATATGTTTGCAAATCATCTAAAAGTTTAGTCCAGGCAGGGCAG
TGGTGGCACATGCCTTTAATCCCAGCACTTGGAAGGGCAGAGGCAGGAGG
ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGGATGAGTTCCAGGATAGC
CAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAA
AGTCTCTTTAAGCCATTAAAACAGCAGCCATGGATGTGAAAGGGACAATT
GTTCAGCAGATTTAATCAATAGCTCTTGAAAGTCTGATTGAGTGACTCCT
GCACTGCTGTCCCTGTTTGGAACTCATGTTACACATTTCTCCCAAAGTTT
TATTTTTCTAGGAATCCATGATACCATCATTCTTTCCAGCCGCTGCCATC
CTGACAGGCATGGGGATACCAGTCACCACTCGGATGTTCCCAGGTTTGTT
TCCAGTTTCCCTCCCATAGACATTGTACACTGGAAACCATTCATCTTTTG
CTTCCCCAGTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_g21.g1 MSMg01no173_g21.g1 CHROMAT_FILE:
MSMg01no173_g21.g1 PHD_FILE: MSMg01no173_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:06 2005
         (582 letters)



>mm_chr12_37645855_37646836
          Length = 982

 Score =  830 bits (429), Expect = 0.0
 Identities = 452/469 (96%), Gaps = 15/469 (3%)
 Strand = Plus / Minus

                                                                       
Query: 129 cagatatgtttgcaaatcatctaaaagtttagtccaggcagggcagtggtggcacatgcc 188
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 982 cagatatgtttgcaaatcatctaaaagtttagtccaggcagggcagtggtggcacacgcc 923

                                                                       
Query: 189 tttaatcccagcacttggaagggcagaggcaggaggatttctgagttcgaggccagcctg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tttaatcccagcacttggaagggcagaggcaggaggatttctgagttcgaggccagcctg 863

                                                                       
Query: 249 gtctacaggatgagttccaggatagccagggctacacagagaaaccctgtcttgaaaaac 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtctacaggatgagttccaggatagccagggctacacagagaaaccctgtcttgaaaaac 803

                                                                       
Query: 309 c---------------aaaaaaaaaaaaaaaagtctctttaagccattaaaacagcagcc 353
           |               ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 802 caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtctctttaagccattagaacagcagcc 743

                                                                       
Query: 354 atggatgtgaaagggacaattgttcagcagatttaatcaatagctcttgaaagtctgatt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atggatgtgaaagggacaattgttcagcagatttaatcaatagctcttgaaagtctgatt 683

                                                                       
Query: 414 gagtgactcctgcactgctgtccctgtttggaactcatgttacacatttctcccaaagtt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagtgactcctgcactgctgtccctgtttggaactcatgttacacatttctcccaaagtt 623

                                                                       
Query: 474 ttatttttctaggaatccatgataccatcattctttccagccgctgccatcctgacaggc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttatttttctaggaatccatgataccatcattctttccagccgctgccatcctgacaggc 563

                                                            
Query: 534 atggggataccagtcaccactcggatgttcccaggtttgtttccagttt 582
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atggggataccagtcaccactcggatgttcccaggtttgtttccagttt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)