BAC Information

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BAC

Clone NameMSMg01-173H02
Chromosome12 (Build37)
Map Location 54,368,742 - 54,369,060
singlet/doubletsinglet
Overlap geneNpas3
Upstream geneArhgap5, Akap6
Downstream geneEgln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H02.T7 (MSMg01no173_h02.b1)MSMg01-173H02.TJ (MSMg01no173_h02.g1)
ACCAG369048AG369049
length719771
length of high quality
(start - end)
317 (45 - 361)143 (76 - 218)
definitionCHROMAT_FILE: MSMg01no173_h02.b1 PHD_FILE: MSMg01no173_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:07 2005CHROMAT_FILE: MSMg01no173_h02.g1 PHD_FILE: MSMg01no173_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTTTTTGGAGGTTAAGAAAAAAAAAAAACTATCAGTGATATATT
TTATTCTAATTGATTTTTTTGCCTCCTTGAGTAATAGAAAGCTATCTTGG
ATCTACAAGGATTGTCAGTAAAAAAAAAAAAAAAATAGGGCAGAATATTC
CAGGAGTCCATGACAAATTGTGTGGATAACTCAGGTTTGAACCTCAAATG
TGCTAGGAATTACTTAGCATAGGAAAGAGAACTCTAACTTCCAAATGCTA
ACTTTTCTCTGTTAGTTCATTCTTTGCCTCAAAGATCATGGGCTATGCCA
ATAGAGGGATTCATCCCTCCCAAGCTATCCCAATTTGAGGCTCGTGAATA
GAAATGGGCGGAATTAAAGCTGAAAAAAAATCATTTATTGTGCCAAGAAC
AAATTCTGTAAGACCTCAGGAGATACTAGAAAGCAACAAAGGACTGACAT
GTACTGGCCCTATACAGGAGGAAGGAACAGGAGATGAAGAGAAAACATCA
CGTGATACAAAAAGGCACTGTGGGTAAATCCAGGGATAAAGTCCCTGGTG
AAGAAGTGAAGGAAAAAAATCATTCTGAAAGTCAGGAAGAAACTAGCACA
GTAAAGGAAGGCCACCTTCCTGAGACACTGGCCTCAGCTCAACTTCAGAT
TCCTACTCACTGTGATCTN
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCAT
CAATGGAAGGATAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATA
GAGGAATGCCAGGGCCAGGAATCAGGTATGGGTGGGTTGGTGAGCAGGGG
GAGGGGGAATGGGAGAGGAACTTCTCCCCTCTTTCTTCTTTCTTTTTCCC
CTATTCTTCTTTTTTTTTCATTATTTTCCTTTTTATTTTTTCTTTTATTC
TTATACCCGCAACGCATTTTTTTTTCCTTTAACACCATGCAGCAACAAAC
CAAAATTTAAATAACTTCCGGGAGCGGGGGCCCNAAGAGGAGAAAANAAA
AAGGGGGGGGGTGCGGCCTTAAAAAAAAAAAAAAATATACGCGGGGGGGG
GGGGGGGTTCCTTTCTATTTTCTTTTTTTTCGCCTATTCCACGGGTATCC
CTCTCGTTTTTCTCTCCCTTCTAGACATATTGCTGTTTTTTTTCTTTTAT
AGAACCATCCAAATCTCACCTGTTTTTCATTTTGTTCTTTGCTCGTAGTC
TAAATGTTACGAAGACGATTTTTTATTTTTGCTCCCATTTCATCCGTCCC
TTCGCGCTTTTCATACTTTTCCCGCCCCCGCGACTTTGTTGATTTGGCTT
TGGCGCCTGTCCTAATGATCATCGTCGCATCACTCTCTCGTTATAATACT
TATTAACCCCGCCCCGTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h02.b1 MSMg01no173_h02.b1 CHROMAT_FILE:
MSMg01no173_h02.b1 PHD_FILE: MSMg01no173_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:07 2005
         (317 letters)



>mm_chr12_54368719_54369436
          Length = 718

 Score =  532 bits (275), Expect = e-155
 Identities = 305/319 (95%), Gaps = 8/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctttttggaggttaag-aaaaaaaaaaaactatcagtgatatattttattct 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 342 gaattcatctttttggaggttaagaaaaaaaaaaaaactatcagtgatatattttattct 283

                                                                       
Query: 64  aattgatttttttgcctccttgagtaatagaaagctatcttggatctacaaggattgtca 123
           |||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aattgattttcttgattccttgagtaatagaaagctatcttggatctacaaggattgtca 223

                                                                       
Query: 124 gt-------aaaaaaaaaaaaaaaatagggcagaatattccaggagtccatgacaaattg 176
           ||       |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtaaaaaaaaaaaaaaaaaaaaaaatagggcagaatattccaggagtccatgacaaattg 163

                                                                       
Query: 177 tgtggataactcaggtttgaacctcaaatgtgctaggaattacttagcataggaaagaga 236
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 162 tgtggataattcaggtttgaacctcaaatgtgctaggaattacttagcatgggaaagaga 103

                                                                       
Query: 237 actctaacttccaaatgctaacttttctctgttagttcattctttgcctcaaagatcatg 296
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 102 actctaacttccaaatgctaacttttctctgttagttcactctttgcctcaaagatcatg 43

                              
Query: 297 ggctatgccaatagaggga 315
           |||||||||||||||||||
Sbjct: 42  ggctatgccaatagaggga 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)