BAC Information

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BAC

Clone NameMSMg01-174C16
Chromosome12 (Build37)
Map Location 99,965,402 - 99,965,714
singlet/doubletsinglet
Overlap genePtpn21
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7
Downstream geneZc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174C16.T7 (MSMg01no174_c16.b1)MSMg01-174C16.TJ (MSMg01no174_c16.g1)
ACCAG369547AG369548
length734736
length of high quality
(start - end)
317 (45 - 361)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no174_c16.b1 PHD_FILE: MSMg01no174_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:58 2005CHROMAT_FILE: MSMg01no174_c16.g1 PHD_FILE: MSMg01no174_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCTGTGACCACTCAGCCCAAAGCATTTGTATGTGAAATACTTTT
TCTTTATCATGTTTTGGTTATTTTTAGAGTCCAAATGAAAGCTGGCAGGA
AAAGAGAAAGGCACACGAAATTCCCACGTCTTCTCAGATTCCAGTGGCGA
TAAGGTCAGTGGATATCTGGGACACCCTGACAGGCTGACTTAAGATGGCA
CACTCCCAAGCCAGGAACACTTCCTAGCACGGTGGGGAAGCTGACTCTGC
CAGACACAGCAATGTCCCTCGAAGTCAGCAGAACTAGAATGCTCCTAACT
TTCCAGAAGAACCCTTCTTAGTGCCCCCCCCCCCCACTAAGCGTGTCATA
TAGCTCTTCTGGGGGTGATCCATGCTCCCGTAAGTAACCTTTCACCTGCA
CTTTATAAGCGAGTCCAATATATAAATTCACTGGGATCGCCAATGAATAA
GTAATAGGAGCTAGAGAAATGGTTCAGAGGTTTAGAGTTGGATTCCTAGC
ACCCGAATGATGGCTCACAACCATCATTAACTCCATTGCCAGTGAACCCC
ACATCCTCTTCTGATCTCTATATGTACCAGACACACATATGGTATACATA
TATACATGTAGCACAACATGTTTAATCATAAAATAATATTAACCTAAAAG
ATCTTTTTCAACAAATAAGCAACTGGTTACGTTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGACGCCCACCTTCTTGAGTTCTTTATATA
TGTTGGATATTAGTCCCCTAAGATACAATTTCCTAAACACATGAAACTCA
AGAAAAATGAAGACTGAAGTGTGGACACTATACCCCTCCTTAGAAGTGGG
AACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGAT
GAAAGGATGGACCATGTAGAGACTGTTCTTATCCAGGGATCCACCCCATA
ATCAGCATCCTATTGCTTACATCTCCCGNACAANCCCCAAGATTTTATCG
AAAGGACCCAGATGTAGCTGCCTCTTGTAAGAATAAGACGGGGCCTAGCA
AACACAGAAGTGGATGCCCACAGTCAGCTAATGGATGGATCACAGGGCTC
CCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAC
CCTATAGGTGGATCAACATTATGAACTAACCAGTACCCTGGAGCTCTTGA
CTCTAGCTGCATATGTATCAAAGGATGGCCTAGTCGGCCATCACTGGAAA
GAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGAACAGGGGAACG
CCAGGGCCAAAAAGGGGGAGTGTGTGGGTAGGGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_c16.b1 MSMg01no174_c16.b1 CHROMAT_FILE:
MSMg01no174_c16.b1 PHD_FILE: MSMg01no174_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:58 2005
         (317 letters)



>mm_chr12_99965198_99965914
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtctgtgaccactcagcccaaagcatttgtatgtgaaatactttttctttatc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtctgtgactactcagcccaaagcatttgtatgtgaaatactttttctttatc 264

                                                                       
Query: 65  atgttttggttatttttagagtccaaatgaaagctggcaggaaaagagaaaggcacacga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttttggttatttttagagtccaaatgaaagctggcaggaaaagagaaaggcacacga 324

                                                                       
Query: 125 aattcccacgtcttctcagattccagtggcgataaggtcagtggatatctgggacaccct 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 aattcccacgtcttctcagattccagtggcgataaggtcaatggatatctgggacaccct 384

                                                                       
Query: 185 gacaggctgacttaagatggcacactcccaagccaggaacacttcctagcacggtgggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacaggctgacttaagatggcacactcccaagccaggaacacttcctagcacggtgggga 444

                                                                       
Query: 245 agctgactctgccagacacagcaatgtccctcgaagtcagcagaactagaatgctcctaa 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 agctgactctgccagacacagcaatgtccctcgaagccagcagaactagaatgctcctaa 504

                        
Query: 305 ctttccagaagaa 317
           |||||||||||||
Sbjct: 505 ctttccagaagaa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)