BAC Information

Click to search

BAC

Clone NameMSMg01-174I17
Chromosome12 (Build37)
Map Location 12,348,266 - 12,348,561
singlet/doubletsinglet
Overlap geneD12Ertd553e
Upstream geneVsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174I17.T7 (MSMg01no174_i17.b1)MSMg01-174I17.TJ (MSMg01no174_i17.g1)
ACCAG369811AG369812
length789736
length of high quality
(start - end)
271 (46 - 316)296 (441 - 736)
definitionCHROMAT_FILE: MSMg01no174_i17.b1 PHD_FILE: MSMg01no174_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:26 2005CHROMAT_FILE: MSMg01no174_i17.g1 PHD_FILE: MSMg01no174_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGACTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTC
AAATGCTTTCTCAGCATCTAAAGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATTTGGATTACGTTGATGGATTTCCGTATATTGAACCATC
CCTGCATCCCTGTGATGAAACCTACTTGGTCAGGAAGGATGATTGTTTTG
ATGTGTTCTTGGATTCATTAGCAAGAACTTTATTGAGGATTTTTGCATCA
ATATTCATAAGGGATATTGTTTCTGAAGTTCTCTATCTTTGCTGGGTCTT
TTTGTGTTGTTGGTTTCCCAGNACAAGACCCCTCATATAATGAGTTGGGT
AGAGTATCTTCTGCCTCTAAAAAAAAAAAAACACTGTGTTGGCGCTGGGA
TTACACCTTCTTTCAAGCCCTGTTTTACTTCTGAACTTCTCCCTCCCTGC
CCCCATGCTTTCTTTTAACTTTACCCCCTCTCTTTCTGTCTCCCACCCCC
TTTCCCCCTTTTTTTTTTTTTTACTTCATTATCTTTCTATTATTTCCAAC
TCCAACCCCTATTTTTTTTTCCATCTTCGCCCCTCCTCCCCCCTCTTTTT
TTTTTTTTCATCCACTCCCACCCCCACCTTACCTTTATTCTATATTTATA
CCTCTACTTTCGTTTCTCCCCCCCCCCCATATACTATCTTTTTTTTTTTC
ACCACCATTTTTATATTCTTCTCTTTACTTTTCATTATA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGTAGGTAGGTGGGAGTCAGAGC
AGATGTATGTGGCATTTATTTCTTCAGAGCAAGAAAGGACATGGAATTAC
TCTGGGTTTTAGAAGTTCTTAAACTGTGAGTGAATGGGGTCTTTAACATT
ATCTTTAACTACTGTATACATTGAATTAACAATGCAAAATGCATGTTATA
AAAGTGGAACAGAATGGTTAAAGTAACAAAGTAAGGTGGTTAAGATTATA
AATAACTTATTAAAGGCTATTATTGATGAATCTCACTTTAACAATGATAT
ATTCACACATGTGTGTTTATTTATACCCACCCCCATAGACAAAGATTTCG
GAAAAATCACAGATAAATTCACTTCTTGAGAATAAAATCTTTATCAAACC
TAGTGGAAATGAAATCATGTTAAACCTAACCAAGTCAAAATGTAACAATA
GGAAGGAATTGAGTTAGATCAGAAGTGAACTATATTTCAATAAACATGAC
TAAGTTTAGTTATCAGAATTCATGAGACATTCTGGAGATATTTTCAAAGA
CAACACACAACACCTGTAGAGAACGTTCACTGTACAACTTGGAAAGGTCT
TCTAGGATTTAATTAACAAAACTGCTAGAAAGTTTAATCTATATGTGAAG
ATGTTCTGACCATTTTCTTTAATATAAATAAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_i17.g1 MSMg01no174_i17.g1 CHROMAT_FILE:
MSMg01no174_i17.g1 PHD_FILE: MSMg01no174_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:26 2005
         (296 letters)



>mm_chr12_12348066_12348761
          Length = 696

 Score =  565 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcaaacctagtggaaatgaaatcatgttaaacctaaccaagtcaaaatgtaacaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttatcaaacctagtggaaatgaaatcatgttaaacctaaccaagtcaaaatgtaacaata 437

                                                                       
Query: 61  ggaaggaattgagttagatcagaagtgaactatatttcaataaacatgactaagtttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggaaggaattgagttagatcagaagtgaactatatttcaataaacatgactaagtttagt 377

                                                                       
Query: 121 tatcagaattcatgagacattctggagatattttcaaagacaacacacaacacctgtaga 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 tatcagaattcatgagacattctggagatattttcaaagacagcacacaacacctgtaga 317

                                                                       
Query: 181 gaacgttcactgtacaacttggaaaggtcttctaggatttaattaacaaaactgctagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaacgttcactgtacaacttggaaaggtcttctaggatttaattaacaaaactgctagaa 257

                                                                   
Query: 241 agtttaatctatatgtgaagatgttctgaccattttctttaatataaataaatact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agtttaatctatatgtgaagatgttctgaccattttctttaatataaataaatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)