CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCATTCATAGGCACCAAAAGCTAACACTATTACTGCTGCCA
TATTGTGCTTGGAGACAGGAGCCTACCAAGGCTGTCCATAGCAGAGCCTC
TACCAGCAACTGACACATGCAGATACTTAGAGCCAAGCATTGGACTGAGG
CCAGGGACCTCTATGGAAGACTTAGGGGAAGGATTGAAGGAGCTGAAGGG
GATGGCGACCCTTAGGAAAAATAACTCACCTTGACCCCTGGGAGCTCTCA
GAAACTAAGCCACCAACCAAAGAGCATATATAGGCTGGTTTGAGGCTCCT
GGCACATATGTAGCAGAAGGCTGCCTTGTCTGGCCTCAGTAGAAGAGTCT
GTGTTAATACTGTAGAGACTTGATGTTCCAGGGGAGGAGGATGCTGGTGG
TGGGTAAGGTGNNNNTNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTCCTT
TTTTTTTTTTTTTCTTCTTNCCTCTTTCCTTTCCTCCTTTTCTCTTTTTT
CTCTCTTCCTTTCCCCTCTTTCTCTCCCTTTTCTTTCCCCCCCTTTTTTC
CCCCTCCTTTTTTTCTCTCTCTTTTTCTCCCTTTCTCCTTTTCTCCCCTC
CCTTTTTCCCCCCCCCCTTTTTTTTTTTTTTTCCCCCCCCCCGTTTTCTT
TTTTCTCTTTTGTCCCCTTTCTCCTTTTTTCCTTCCATTTTN

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGAAGTAAATTTTGGTTTGT
TTTCTTTCTCAGAAATACATACCACGTCAAATCAAGTAAATTCAATGAGA
ACAATGAATAATTATTCACTTTATACCTTTAACAAAAATTTGTTACTTAT
ATGTAAATGTAGGTTTCTAAAAAAGTATTTTGATAATCATTAAAACAAAA
TTAAGAATCCTAAAGAAATATTTTAGAGGTTTGCTATCAGTAAACTTAAT
TATTCAGAAAACTATTTTCTAGCTTTGTAAAAAGCTTATTTTGATTTGTG
AAACAAGACGCCATTATGATCAACATATGTTTCTAAAGTAACAAATATAC
TACAGAAAACAGAGCTTAAGGTGTTTGTCTTATGTTTTAATGTTCATCCA
GTTTAGCAAACATTCCTACTTCCTTTTGACCCAATATAATTGCATATGGA
CTCCACTATAATTTAAGCTGAAAGTATTATATCTTAAATAGTTCTATTGT
TTTCTCAATCCTTTTGGTCAAGTGCAGATTTGAACAGTCATTTTATTTAT
GCATTTAGTATTCATCTCCAAATTTCCATTGTCATTATGCCCTTAAAAGT
CAATTAAGTCATCTTAAGATAATGTTATCTTAATTAGAATCATGTGTTTA
CTTGTATTAATAAATATTTTTGAA

Query= MSMg01no174_l04.g1 MSMg01no174_l04.g1 CHROMAT_FILE:
MSMg01no174_l04.g1 PHD_FILE: MSMg01no174_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:38 2005
         (648 letters)



>mm_chr12_95288087_95289134
          Length = 1048

 Score = 1237 bits (640), Expect = 0.0
 Identities = 646/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgagaagtaaattttggtttgttttctttctcagaaatacataccacgtcaaatcaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 848 tgtgagaagtaaattttggtttgttttctttctcagaaatacataccaggtcaaatcaag 789

                                                                       
Query: 61  taaattcaatgagaacaatgaataattattcactttatacctttaacaaaaatttgttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 taaattcaatgagaacaatgaataattattcactttatacctttaacaaaaatttgttac 729

                                                                       
Query: 121 ttatatgtaaatgtaggtttctaaaaaagtattttgataatcattaaaacaaaattaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttatatgtaaatgtaggtttctaaaaaagtattttgataatcattaaaacaaaattaaga 669

                                                                       
Query: 181 atcctaaagaaatattttagaggtttgctatcagtaaacttaattattcagaaaactatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atcctaaagaaatattttagaggtttgctatcagtaaacttaattattcagaaaactatt 609

                                                                       
Query: 241 ttctagctttgtaaaaagcttattttgatttgtgaaacaagacgccattatgatcaacat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 608 ttctagctttgtaaaaagcttattttgatttgtgaaacaagacgccattaggatcaacat 549

                                                                       
Query: 301 atgtttctaaagtaacaaatatactacagaaaacagagcttaaggtgtttgtcttatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atgtttctaaagtaacaaatatactacagaaaacagagcttaaggtgtttgtcttatgtt 489

                                                                       
Query: 361 ttaatgttcatccagtttagcaaacattcctacttccttttgacccaatataattgcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttaatgttcatccagtttagcaaacattcctacttccttttgacccaatataattgcata 429

                                                                       
Query: 421 tggactccactataatttaagctgaaagtattatatcttaaatagttctattgttttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggactccactataatttaagctgaaagtattatatcttaaatagttctattgttttctc 369

                                                                       
Query: 481 aatccttttggtcaagtgcagatttgaacagtcattttatttatgcatttagtattcatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatccttttggtcaagtgcagatttgaacagtcattttatttatgcatttagtattcatc 309

                                                                       
Query: 541 tccaaatttccattgtcattatgcccttaaaagtcaattaagtcatcttaagataatgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccaaatttccattgtcattatgcccttaaaagtcaattaagtcatcttaagataatgtt 249

                                                           
Query: 601 atcttaattagaatcatgtgtttacttgtattaataaatatttttgaa 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcttaattagaatcatgtgtttacttgtattaataaatatttttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)