Query= MSMg01no174_l17.b1 MSMg01no174_l17.b1 CHROMAT_FILE:
MSMg01no174_l17.b1 PHD_FILE: MSMg01no174_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:40 2005
(317 letters)
>mm_chr12_68477846_68478562
Length = 717
Score = 600 bits (310), Expect = e-176
Identities = 313/314 (99%)
Strand = Plus / Plus
Query: 4 ggaattctaaggattgaaatgggtagctcttagattgttaagtggcaatccacttgttag 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattctaaggattgaaatgggtagctcttagattgtgaagtggcaatccacttgttag 263
Query: 64 cagatttgtcacctctctaattgattattgttcctgattcatgtgaggcttccataatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagatttgtcacctctctaattgattattgttcctgattcatgtgaggcttccataatct 323
Query: 124 ttcactcgagatagtttatctgcagtgggctattaaatactacactaatttcattaaatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcactcgagatagtttatctgcagtgggctattaaatactacactaatttcattaaatg 383
Query: 184 ggcacaccatagttggcttattcatttacctgcagatggagattaggtagatttcactaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcacaccatagttggcttattcatttacctgcagatggagattaggtagatttcactaa 443
Query: 244 ttggggagtagagatgcactgtgaacatcattttgaagacacctttctacatatgcttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttggggagtagagatgcactgtgaacatcattttgaagacacctttctacatatgcttta 503
Query: 304 cttactctcatata 317
||||||||||||||
Sbjct: 504 cttactctcatata 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_l17.g1 MSMg01no174_l17.g1 CHROMAT_FILE:
MSMg01no174_l17.g1 PHD_FILE: MSMg01no174_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:40 2005
(611 letters)
>mm_chr12_68607180_68608190
Length = 1011
Score = 563 bits (291), Expect = e-164
Identities = 300/303 (99%)
Strand = Plus / Minus
Query: 1 ttttaaccttttgtgagagaaaaactgaaagaacacaaagctgggtgagcaagagacaga 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttttaaacttttgtgagagaaaaactgaaagaacacaaagctgggtgagcaagagacaga 244
Query: 61 gaggatgtgagaagagtttggggacagaaaagaatatgatcagaatatatttaatacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaggatgtgagaagagtttggggacagaaaagaatatgatcagaatatatttaatacaaa 184
Query: 121 gttttaaaaataaaaattccaatcttaggaccaccgctgagtggaacacaacttctgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gttttaaaaataaaaattccaatcttaggaccaccgctgagtggaacacaacttctgttc 124
Query: 181 caatccaattgggcaggatctaaggcagcactagggaagcaggaaacccgacctgaccag 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 123 caatccaattgggcaggatctaagacagcactagggaagcaggaaacccgacctgaccag 64
Query: 241 ggccacaagtcctttccggtcagcaccagcaccaggtcaccttgggcgcagagccggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 63 ggccacaagtcctttccggtcagcaccagcaccaggtcaccttgggcgcagagtcggcag 4
Query: 301 aca 303
|||
Sbjct: 3 aca 1
Score = 110 bits (57), Expect = 2e-28
Identities = 122/145 (84%), Gaps = 8/145 (5%)
Strand = Plus / Minus
Query: 336 atctgaggaccacctg-tgagtggaacacaacttctgttccaatccaatcat--gctgga 392
|||| ||||||||| | |||||||||||||||||||||||||||||||| | || |||
Sbjct: 162 atcttaggaccacc-gctgagtggaacacaacttctgttccaatccaat--tgggcagga 106
Query: 393 -ccagagacagcattagagaagcagaaaacctggcctgaccagggtcacaaatcccttct 451
| | |||||||| ||| ||||||| ||||| | ||||||||||| ||||| ||| |||
Sbjct: 105 tcta-agacagcactagggaagcaggaaacccgacctgaccagggccacaagtcctttcc 47
Query: 452 ggtcagtgccagcaccacgtcacct 476
|||||| ||||||||| |||||||
Sbjct: 46 ggtcagcaccagcaccaggtcacct 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
