TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTCTTTCGCNTNTCGTTCCTGTGAAGTTCTTTGATCC
ATTTAGATTTGACCTTAGTACAAGAAGATAAATATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCT
GTAGTAAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCTTTTAT
CCTTGATAAGAGTTTTTGCTATCCTAGGTTTTTTGTTAT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAATATGTTGGTCGCTAAAAGAAGA
TGAACAGACGGTCTGAATTTCATTCTTTAACTGTAACTTCATGTAAAAGT
TAAGGCTATGGGTTTGCTTTTTAGAGGCCAATAAAATTAAACCACCTTGG
GAATAAAAAATTCAGTTACTTTTTAAGGAAAATTTTATTCTGTTGTCCTT
TTGTGAAACAGGCACTTTTGAAAACATGGCTTATTTGGTAGCAATATTGT
AGTTTGGAGAAAGTACAGTTGAATAAAATCCAAATGCCTCTGCTATTTTG
TTCTCTAGCTATTTGCCATATATCAAAACCTGTCAATTGTATTCCAATAG
GGAATATAATTTCACTGACAAATATTTATTCGCATTTCATTCTGTGACAA
ATTGTGGCAAGAAAGTGGGACCTTTGTGTTTGATTGGCTTTTTCTCTTTT
GTAACCTATATCCTTGAGTCCTCCTGGGATAACAAAATCCTTCAACACAG
GATTTGGATAGTGGTTGAACAGGGAAGTTTAGAATTAGATGAACATGCAT
TTTTATCTTGGAATGAACTGTGGGAAACTCAGTGCTGACTGATCCTTTGT
ATTCTCTCTCCATGATTTGGAAACACATTCTCCAGCCAGGTGTTCTCCCA
AACAATGGCTCCACAATA

Query= MSMg01no174_m21.g1 MSMg01no174_m21.g1 CHROMAT_FILE:
MSMg01no174_m21.g1 PHD_FILE: MSMg01no174_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:45 2005
         (588 letters)



>mm_chr12_39611475_39612463
          Length = 989

 Score = 1093 bits (565), Expect = 0.0
 Identities = 583/589 (98%), Gaps = 1/589 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaacttcatgtaaaagttaaggctatgggtttgctttttagaggccaataaaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaacttcatgtaaaagttaaggctatgggtttgctttttagaggccaataaaattaa 260

                                                                       
Query: 61  accaccttgggaataaaaaattcagttactttttaaggaaaattttattctgttgtcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaccttgggaataaaaaattcagttactttttaaggaaaattttattctgttgtcctt 320

                                                                       
Query: 121 ttgtgaaacaggcacttttgaaaacatggcttatttggtagcaatattgtagtttggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgaaacaggcacttttgaaaacatggcttatttggtagcaatattgtagtttggaga 380

                                                                       
Query: 181 aagtacagttgaataaaatccaaatgcctctgctattttgttctctagctatttgccata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aagtacagttgaataaaatccaaatgcctctgctattttgttctctagctgtttgccata 440

                                                                       
Query: 241 tatcaaaacctgtcaattgtattccaatagggaatataatttcactgacaaatatttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcaaaacctgtcaattgtattccaatagggaatataatttcactgacaaatatttatt 500

                                                                       
Query: 301 cgcatttcattctgtgacaaattgtggcaagaaagtgggacctttgtgtttgattggctt 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgcatttcattctctgacaaattgtggcaagaaagtgggacctttgtgtttgattggctt 560

                                                                       
Query: 361 tttctcttttgtaacctatatccttgagtcctcctgggataacaaaatccttcaacacag 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tttctcttttgtaacctatatccttgagttctcctgggataacaaaatccttcaacacag 620

                                                                       
Query: 421 gatttggatagtggttgaacagggaagtttagaattagatgaacatgcattttt-atctt 479
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| 
Sbjct: 621 gatttggatagtggttgaacagggaagtttagaattagatgagcatgcattttttatctc 680

                                                                       
Query: 480 ggaatgaactgtgggaaactcagtgctgactgatcctttgtattctctctccatgatttg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaatgaactgtgggaaactcagtgctgactgatcctttgtattctctctccatgatttg 740

                                                            
Query: 540 gaaacacattctccagccaggtgttctcccaaacaatggctccacaata 588
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaacacattctccagccaggtgttctcccaaacaatggctccacaata 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space:   565862
Effective search space used:   565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)