BAC Information

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BAC

Clone NameMSMg01-175F14
Chromosome12 (Build37)
Map Location 87,635,042 - 87,635,286
singlet/doubletsinglet
Overlap genenone
Upstream gene2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik
Downstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F14.T7 (MSMg01no175_f14.b1)MSMg01-175F14.TJ (MSMg01no175_f14.g1)
ACCAG370365AG370366
length826713
length of high quality
(start - end)
248 (108 - 355)279 (93 - 371)
definitionCHROMAT_FILE: MSMg01no175_f14.b1 PHD_FILE: MSMg01no175_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:24 2005CHROMAT_FILE: MSMg01no175_f14.g1 PHD_FILE: MSMg01no175_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCTTNTTTCTTTTTCTTGTCTTGCCCACCCCCGNTTTTTTTGACA
CCNNNNGGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCGTAGGTAGATGAGGGGGCATACTTCAGTGAAAG
GCAGGTGTCCGGAGTTAAGAAAAAGTGTTTGAAGGGAAGAGCTTATGAGC
ATATTAAAAATGCAACACCATCTATGACAGCTAGCTCAAGTAATGCACAA
ATCAAGAGGGGAGAAGGCAACCGACCTGGGCAAGAGAAGGAGTGCGGTTG
GGAGACGGGGGTGGGGGAGAGTGAGATCAGTTGCCGAGATGCTGGGGTTA
ACAGGGTTAGGAATGGACGCTTTGTTTTTTTTGTTACCACGAGGGGCTCC
AGCAGGGACAATGTTGAGTAGGTTCCCAANACTGACCCCGGTGTGGTTTA
TTTTTGTTNNGGTGTTGGTCGCCCCCCAAAAAAAAAAAAACTATGGGGGG
GGGGCGGGAACAGCTCCTCGCTCCGCTTGATTCCGGAGTGCTCTGATCTG
CTTACCTTCTCGTGAACCTCTCCACCACTCGACAACATTTCCGGTTCCCT
AAACGTATCCATGTATCTATTACCTGTGTCTTTATCTAGAACCCCTGAGG
CAGGGTCAGTTTATTCGTGCCCGTCTCCCCGGACCAATCCTTCCGTCCAC
TCAAGCGATCTCTCCAATTATATATCCCGCTTGTCCGCCTGTCTCTCTTT
GTTTAATGGTTTTCCACGTTTCGCCCCACCACCAGTCCTTCTCCACACGC
GACTATTAGGTCTACCCATTCAACCG
NNTGACGTCCCCCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAA
CCAGAGCTATACAGTGAACCCTTGTCTCAAGAAAATTTGTATACCTTTTC
CTTACTCTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTACACATACCATG
GCACAGCTGTAGAGGTGTAAATGTCAAAGGATAACTCTGAAGAGTTAATT
TTCTCCTTCCACCATGTACATCTTATGGCTTGGTGGGAAGTGCCTTTATC
CACTGAGCTATCTCACTGGCCCACCAAGCGTATTTGAAAGGATTCAAGTA
AGCAGCCAAATGAAGGACTATTTAGTGNTTTGGCCCCANTCTTNCCTTGA
TGAAGTTGGGGTGAGCTACCTGTCCATCACTGACCAGAAAAATAAAAGCC
TGCTTCTTTTGGGTCTCTATGGAGGCTTTATTACATAGGCATGGCCATCG
TGGACGACCCTTCCCCTGCACTTTTCTCCTCTCCCAGACTCTGAAGTCAG
GCATAAGGAGGATGGGGGACAGACATCCAAACTTCCAACCCTTCGGTCAC
ACAGGTTGAAGGCAGCTCCTTCAGCCACCAGTGCTCCTTCCTGAGTCTCT
CTTATTCTCTTATTTTCAGTCCTCCCATTAATATACAAACAAAACAAACC
CCAGAAATCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f14.b1 MSMg01no175_f14.b1 CHROMAT_FILE:
MSMg01no175_f14.b1 PHD_FILE: MSMg01no175_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:24 2005
         (248 letters)



>mm_chr12_87634838_87635486
          Length = 649

 Score =  406 bits (210), Expect = e-118
 Identities = 237/246 (96%), Gaps = 3/246 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtaggtaga-tgagggggcatacttcagtgaaaggcaggtgtccggagttaaga 63
           |||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 449 gaattcataggtagagt-agggggcatacttcagtgaaaggcaggtgtccagagttaaga 391

                                                                       
Query: 64  aaaagtgtttgaagggaagagcttatgagcatattaaaaatgcaacaccatctatgacag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaaagtgtttgaagggaagagcttatgagcatattaaaaatgcaacaccatctatgacag 331

                                                                       
Query: 124 ctagctcaagtaatgcacaaatcaagaggggagaaggcaaccgacctgggcaagagaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctagctcaagtaatgcacaaatcaagaggggagaaggcaaccgacctgggcaagagaagg 271

                                                                       
Query: 184 agtgcggttgggagacgggggtgggggag-agtgagatcagttgccgagatgctggggtt 242
           ||||||||||||||||||||| ||||| | ||||||||||||||| |||| |||||||||
Sbjct: 270 agtgcggttgggagacggggggggggggggagtgagatcagttgctgagaggctggggtt 211

                 
Query: 243 aacagg 248
           ||||||
Sbjct: 210 aacagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)