Query= MSMg01no176_b06.b1 MSMg01no176_b06.b1 CHROMAT_FILE:
MSMg01no176_b06.b1 PHD_FILE: MSMg01no176_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:23 2005
(189 letters)
>mm_chr12_79125489_79126076
Length = 588
Score = 311 bits (161), Expect = 1e-89
Identities = 179/185 (96%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 1 aggtgagatagcaggaaggagggtggaatatattagttgaaaactcagaaaataaatctc 60
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aggtgagatagcaggaaaga-ggtggaatatattagttgaaaactcagaaaataaatctc 289
Query: 61 tgcagggaaggcctggtattatcaagtatagagataacatttaaagtgatggaaattaat 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 288 tgcagggaaggcctggtattatcaagtatagagataacatttaaaatgatggaaatgaat 229
Query: 121 gaggtagcttaaaaagaaagtctaaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 180
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 228 gaggtagcttaaagagaaagtctaaacagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgt 169
Query: 181 gtgtg 185
|||||
Sbjct: 168 gtgtg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space: 104980
Effective search space used: 104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no176_b06.g1 MSMg01no176_b06.g1 CHROMAT_FILE:
MSMg01no176_b06.g1 PHD_FILE: MSMg01no176_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:23 2005
(767 letters)
>mm_chr12_79110403_79111569
Length = 1167
Score = 1317 bits (681), Expect = 0.0
Identities = 699/705 (99%)
Strand = Plus / Plus
Query: 63 gggacctcatctcttgatctgaacaagatacccgagctcttttccacagcccctctctgt 122
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggacctcatctcttgatgtgaacaagatacccgagctcttttccacagcccctctctgt 322
Query: 123 cttttctcctctcctcttctctgtggctcaccaacctgcaaatgcactctctgctggcag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 323 cttttctcctctcctcttctctgtggctcaccaacctgcaaatgcactctctgcttgcag 382
Query: 183 acccacagtcacaatgctttcctaaaatccagagaaggcaagagaaatcaaggattggaa 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 acccacagtcacaatgctttcctaaaatccagagaaggcaacagaaatcaaggattggaa 442
Query: 243 tactcacccaacaaagaaaagaccagatagcagcatctaaaatcacttcaatcaccatta 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 tactcacccaacaaagaaaagaccagatagcagcatgtaaaatcacttcaatcaccatta 502
Query: 303 actccagatgtctgaagccaacacaaaaacacaaaaatgaatagtcaagataatatgcct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 actccagatgtctgaagccaacacaaaaacacaaaaatgaatagtcaagataatatgcct 562
Query: 363 ccaaccagaacccagtagccctactatagtaggccctgagaattgcaatatagctgagat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccaaccagaacccagtagccctactatagtaggccctgagaattgcaatatagctgagat 622
Query: 423 ataagacaaggacttcaaaataacaattatgaatatgctaaagatcttagagagtatgaa 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 ataagacaaggacttcaaaataataattatgaatatgctaaagatcttagagagtatgaa 682
Query: 483 tgaatcccttaatgaagatcacaaatccacaaagaaatagtagcatgaaatactgaaaac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgaatcccttaatgaagatcacaaatccacaaagaaatagtagcatgaaatactgaaaac 742
Query: 543 agttcaagagacataaaagtagaattactaaagaaaacccaaactgaaataaactggaag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agttcaagagacataaaagtagaattactaaagaaaacccaaactgaaataaactggaag 802
Query: 603 tgaaaaatgtaaagtcaaaaacctcagatgttacataaattcttgagacatgacagatgt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgaaaaatgtaaagtcaaaaacctcagatgttacataaattcttgagacatgacagatgt 862
Query: 663 cagcccagacttctatatccagcaaaactataaatcactgcagagaaagaaataaaagca 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagcccagacttctatatccagcaaaactataaatcactgcagagaaagaaataaaagca 922
Query: 723 tttaaaacttatttaaaacaatacctacttactaatccagctcta 767
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 923 tttaaaacctatttaaaacaatacctacttactaatccagctcta 967
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1167
Length adjustment: 10
Effective length of query: 757
Effective length of database: 1157
Effective search space: 875849
Effective search space used: 875849
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
